Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0461

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0459 and Dshi_0460 overlap by 4 nucleotidesDshi_0460 and Dshi_0461 overlap by 4 nucleotidesDshi_0461 and Dshi_0462 overlap by 4 nucleotides Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223 _0459 Dshi_0460: Dshi_0460 - hypothetical protein (RefSeq), at 446,220 to 447,119 _0460 Dshi_0461: Dshi_0461 - hypothetical protein (RefSeq), at 447,116 to 447,790 _0461 Dshi_0462: Dshi_0462 - hypothetical protein (RefSeq), at 447,787 to 448,983 _0462 Position (kb) 447 448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 446.123 kb on + strand, within Dshi_0459at 446.142 kb on + strandat 446.142 kb on + strandat 446.160 kb on + strandat 446.168 kb on - strandat 446.207 kb on + strandat 446.207 kb on + strandat 446.293 kb on + strandat 446.343 kb on - strand, within Dshi_0460at 446.372 kb on + strand, within Dshi_0460at 446.396 kb on - strand, within Dshi_0460at 446.536 kb on + strand, within Dshi_0460at 446.632 kb on - strand, within Dshi_0460at 446.672 kb on + strand, within Dshi_0460at 446.688 kb on + strand, within Dshi_0460at 446.689 kb on + strand, within Dshi_0460at 446.690 kb on - strand, within Dshi_0460at 446.696 kb on - strand, within Dshi_0460at 446.697 kb on + strand, within Dshi_0460at 446.707 kb on - strand, within Dshi_0460at 446.712 kb on - strand, within Dshi_0460at 446.723 kb on - strand, within Dshi_0460at 446.750 kb on + strand, within Dshi_0460at 446.758 kb on - strand, within Dshi_0460at 446.773 kb on - strand, within Dshi_0460at 446.791 kb on + strand, within Dshi_0460at 446.826 kb on - strand, within Dshi_0460at 446.831 kb on - strand, within Dshi_0460at 446.870 kb on + strand, within Dshi_0460at 446.873 kb on - strand, within Dshi_0460at 446.892 kb on + strand, within Dshi_0460at 446.937 kb on + strand, within Dshi_0460at 446.949 kb on + strand, within Dshi_0460at 447.071 kb on - strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.122 kb on - strandat 447.135 kb on - strandat 447.142 kb on + strandat 447.159 kb on - strandat 447.166 kb on + strandat 447.190 kb on - strand, within Dshi_0461at 447.214 kb on + strand, within Dshi_0461at 447.235 kb on + strand, within Dshi_0461at 447.276 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.373 kb on + strand, within Dshi_0461at 447.379 kb on - strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.394 kb on - strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.416 kb on - strand, within Dshi_0461at 447.458 kb on - strand, within Dshi_0461at 447.496 kb on + strand, within Dshi_0461at 447.512 kb on + strand, within Dshi_0461at 447.557 kb on + strand, within Dshi_0461at 447.602 kb on - strand, within Dshi_0461at 447.625 kb on - strand, within Dshi_0461at 447.660 kb on - strand, within Dshi_0461at 447.685 kb on + strand, within Dshi_0461at 447.691 kb on - strand, within Dshi_0461at 447.693 kb on - strand, within Dshi_0461at 447.729 kb on - strandat 447.731 kb on - strandat 447.802 kb on - strandat 447.804 kb on - strandat 447.909 kb on + strand, within Dshi_0462at 447.910 kb on - strand, within Dshi_0462at 447.934 kb on - strand, within Dshi_0462at 447.950 kb on - strand, within Dshi_0462at 447.970 kb on + strand, within Dshi_0462at 447.983 kb on - strand, within Dshi_0462at 447.984 kb on - strand, within Dshi_0462at 447.989 kb on - strand, within Dshi_0462at 447.994 kb on - strand, within Dshi_0462at 448.001 kb on + strand, within Dshi_0462at 448.009 kb on - strand, within Dshi_0462at 448.011 kb on + strand, within Dshi_0462at 448.019 kb on - strand, within Dshi_0462at 448.023 kb on + strand, within Dshi_0462at 448.031 kb on - strand, within Dshi_0462at 448.047 kb on - strand, within Dshi_0462at 448.057 kb on - strand, within Dshi_0462at 448.102 kb on + strand, within Dshi_0462at 448.113 kb on + strand, within Dshi_0462at 448.127 kb on + strand, within Dshi_0462at 448.222 kb on + strand, within Dshi_0462at 448.223 kb on + strand, within Dshi_0462at 448.228 kb on + strand, within Dshi_0462at 448.228 kb on + strand, within Dshi_0462at 448.294 kb on - strand, within Dshi_0462at 448.301 kb on + strand, within Dshi_0462at 448.332 kb on + strand, within Dshi_0462at 448.340 kb on + strand, within Dshi_0462at 448.349 kb on - strand, within Dshi_0462at 448.373 kb on + strand, within Dshi_0462at 448.455 kb on + strand, within Dshi_0462at 448.465 kb on + strand, within Dshi_0462at 448.478 kb on - strand, within Dshi_0462at 448.480 kb on + strand, within Dshi_0462at 448.516 kb on - strand, within Dshi_0462at 448.525 kb on - strand, within Dshi_0462at 448.547 kb on + strand, within Dshi_0462at 448.563 kb on - strand, within Dshi_0462at 448.572 kb on - strand, within Dshi_0462at 448.574 kb on - strand, within Dshi_0462at 448.579 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.596 kb on - strand, within Dshi_0462at 448.611 kb on + strand, within Dshi_0462at 448.620 kb on - strand, within Dshi_0462at 448.640 kb on + strand, within Dshi_0462at 448.645 kb on + strand, within Dshi_0462at 448.652 kb on - strand, within Dshi_0462at 448.653 kb on - strand, within Dshi_0462at 448.744 kb on - strand, within Dshi_0462at 448.754 kb on - strand, within Dshi_0462at 448.760 kb on + strand, within Dshi_0462at 448.784 kb on + strand, within Dshi_0462

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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446,123 + Dshi_0459 0.90 -0.8
446,142 + -0.3
446,142 + +1.0
446,160 + -0.5
446,168 - +1.4
446,207 + -0.1
446,207 + +0.1
446,293 + -0.5
446,343 - Dshi_0460 0.14 +0.2
446,372 + Dshi_0460 0.17 -0.5
446,396 - Dshi_0460 0.20 +1.2
446,536 + Dshi_0460 0.35 -1.2
446,632 - Dshi_0460 0.46 -0.0
446,672 + Dshi_0460 0.50 -1.0
446,688 + Dshi_0460 0.52 -0.7
446,689 + Dshi_0460 0.52 +0.5
446,690 - Dshi_0460 0.52 +0.3
446,696 - Dshi_0460 0.53 +0.8
446,697 + Dshi_0460 0.53 -0.6
446,707 - Dshi_0460 0.54 -0.1
446,712 - Dshi_0460 0.55 -0.8
446,723 - Dshi_0460 0.56 -0.3
446,750 + Dshi_0460 0.59 +0.1
446,758 - Dshi_0460 0.60 -1.0
446,773 - Dshi_0460 0.61 +1.0
446,791 + Dshi_0460 0.63 +2.8
446,826 - Dshi_0460 0.67 -0.3
446,831 - Dshi_0460 0.68 -0.9
446,870 + Dshi_0460 0.72 -0.5
446,873 - Dshi_0460 0.73 -0.9
446,892 + Dshi_0460 0.75 +1.7
446,937 + Dshi_0460 0.80 -2.5
446,949 + Dshi_0460 0.81 +0.2
447,071 - +1.3
447,114 + -0.5
447,114 + +0.0
447,114 + -0.4
447,122 - +0.3
447,135 - +0.4
447,142 + -0.3
447,159 - +2.5
447,166 + -1.1
447,190 - Dshi_0461 0.11 +0.9
447,214 + Dshi_0461 0.15 -0.5
447,235 + Dshi_0461 0.18 -0.1
447,276 - Dshi_0461 0.24 +0.2
447,286 - Dshi_0461 0.25 -0.9
447,286 - Dshi_0461 0.25 +0.2
447,373 + Dshi_0461 0.38 -0.4
447,379 - Dshi_0461 0.39 +1.9
447,381 + Dshi_0461 0.39 +0.9
447,381 + Dshi_0461 0.39 -0.3
447,381 + Dshi_0461 0.39 +0.9
447,381 + Dshi_0461 0.39 +0.1
447,381 + Dshi_0461 0.39 -0.9
447,389 - Dshi_0461 0.40 +0.9
447,389 - Dshi_0461 0.40 -0.8
447,394 - Dshi_0461 0.41 +2.5
447,408 + Dshi_0461 0.43 -0.5
447,408 + Dshi_0461 0.43 +1.8
447,416 - Dshi_0461 0.44 +0.2
447,458 - Dshi_0461 0.51 +0.9
447,496 + Dshi_0461 0.56 +0.8
447,512 + Dshi_0461 0.59 +0.5
447,557 + Dshi_0461 0.65 +1.1
447,602 - Dshi_0461 0.72 -0.6
447,625 - Dshi_0461 0.75 +0.2
447,660 - Dshi_0461 0.81 +0.5
447,685 + Dshi_0461 0.84 +0.1
447,691 - Dshi_0461 0.85 +2.3
447,693 - Dshi_0461 0.85 -0.5
447,729 - -1.2
447,731 - +0.4
447,802 - +2.3
447,804 - -0.2
447,909 + Dshi_0462 0.10 -0.8
447,910 - Dshi_0462 0.10 +0.7
447,934 - Dshi_0462 0.12 -0.1
447,950 - Dshi_0462 0.14 +0.2
447,970 + Dshi_0462 0.15 +1.9
447,983 - Dshi_0462 0.16 -0.2
447,984 - Dshi_0462 0.16 -0.8
447,989 - Dshi_0462 0.17 -1.9
447,994 - Dshi_0462 0.17 -0.1
448,001 + Dshi_0462 0.18 -0.5
448,009 - Dshi_0462 0.19 -1.3
448,011 + Dshi_0462 0.19 -0.4
448,019 - Dshi_0462 0.19 -0.6
448,023 + Dshi_0462 0.20 +0.7
448,031 - Dshi_0462 0.20 -0.8
448,047 - Dshi_0462 0.22 -0.3
448,057 - Dshi_0462 0.23 -0.1
448,102 + Dshi_0462 0.26 -0.7
448,113 + Dshi_0462 0.27 +0.2
448,127 + Dshi_0462 0.28 -0.3
448,222 + Dshi_0462 0.36 -0.1
448,223 + Dshi_0462 0.36 -0.4
448,228 + Dshi_0462 0.37 -1.3
448,228 + Dshi_0462 0.37 -0.5
448,294 - Dshi_0462 0.42 -1.1
448,301 + Dshi_0462 0.43 +0.2
448,332 + Dshi_0462 0.46 -0.6
448,340 + Dshi_0462 0.46 -1.1
448,349 - Dshi_0462 0.47 -0.3
448,373 + Dshi_0462 0.49 -0.6
448,455 + Dshi_0462 0.56 +0.3
448,465 + Dshi_0462 0.57 +0.7
448,478 - Dshi_0462 0.58 -0.9
448,480 + Dshi_0462 0.58 -1.4
448,516 - Dshi_0462 0.61 -0.2
448,525 - Dshi_0462 0.62 +0.3
448,547 + Dshi_0462 0.63 -0.5
448,563 - Dshi_0462 0.65 -0.2
448,572 - Dshi_0462 0.66 -0.1
448,574 - Dshi_0462 0.66 -1.7
448,579 - Dshi_0462 0.66 -0.2
448,589 - Dshi_0462 0.67 +0.6
448,589 - Dshi_0462 0.67 -1.6
448,596 - Dshi_0462 0.68 -0.1
448,611 + Dshi_0462 0.69 -0.1
448,620 - Dshi_0462 0.70 -0.4
448,640 + Dshi_0462 0.71 -0.1
448,645 + Dshi_0462 0.72 -0.2
448,652 - Dshi_0462 0.72 -0.4
448,653 - Dshi_0462 0.72 -1.7
448,744 - Dshi_0462 0.80 -0.2
448,754 - Dshi_0462 0.81 -0.1
448,760 + Dshi_0462 0.81 -1.1
448,784 + Dshi_0462 0.83 -1.3

Or see this region's nucleotide sequence