Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0456 and Dshi_0457 overlap by 4 nucleotides Dshi_0457 and Dshi_0458 overlap by 4 nucleotides Dshi_0458 and Dshi_0459 overlap by 8 nucleotides
Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995
_0456
Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900
_0457
Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268
_0458
Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223
_0459
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 443.023 kb on + strand at 443.031 kb on - strand at 443.033 kb on + strand at 443.056 kb on - strand at 443.123 kb on - strand at 443.205 kb on - strand, within Dshi_0456 at 443.207 kb on + strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.304 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.342 kb on + strand, within Dshi_0456 at 443.352 kb on + strand, within Dshi_0456 at 443.376 kb on + strand, within Dshi_0456 at 443.379 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.431 kb on + strand, within Dshi_0456 at 443.432 kb on - strand, within Dshi_0456 at 443.445 kb on - strand, within Dshi_0456 at 443.563 kb on + strand, within Dshi_0456 at 443.578 kb on + strand, within Dshi_0456 at 443.634 kb on - strand, within Dshi_0456 at 443.636 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.639 kb on - strand, within Dshi_0456 at 443.671 kb on - strand, within Dshi_0456 at 443.683 kb on - strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.693 kb on - strand, within Dshi_0456 at 443.721 kb on + strand, within Dshi_0456 at 443.737 kb on + strand, within Dshi_0456 at 443.745 kb on - strand, within Dshi_0456 at 443.772 kb on + strand, within Dshi_0456 at 443.790 kb on + strand, within Dshi_0456 at 443.797 kb on + strand, within Dshi_0456 at 443.801 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.812 kb on + strand, within Dshi_0456 at 443.814 kb on - strand, within Dshi_0456 at 443.847 kb on + strand, within Dshi_0456 at 443.863 kb on + strand, within Dshi_0456 at 443.884 kb on - strand, within Dshi_0456 at 443.912 kb on + strand at 443.912 kb on + strand at 443.948 kb on - strand at 443.979 kb on - strand at 444.020 kb on - strand at 444.054 kb on + strand at 444.127 kb on - strand, within Dshi_0457 at 444.203 kb on - strand, within Dshi_0457 at 444.291 kb on + strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.299 kb on - strand, within Dshi_0457 at 444.372 kb on - strand, within Dshi_0457 at 444.389 kb on - strand, within Dshi_0457 at 444.420 kb on - strand, within Dshi_0457 at 444.526 kb on - strand, within Dshi_0457 at 444.541 kb on + strand, within Dshi_0457 at 444.559 kb on + strand, within Dshi_0457 at 444.688 kb on - strand, within Dshi_0457 at 444.712 kb on - strand, within Dshi_0457 at 444.801 kb on - strand, within Dshi_0457 at 444.864 kb on - strand at 444.886 kb on - strand at 444.946 kb on + strand, within Dshi_0458 at 444.977 kb on + strand, within Dshi_0458 at 444.982 kb on + strand, within Dshi_0458 at 444.992 kb on + strand, within Dshi_0458 at 445.092 kb on + strand, within Dshi_0458 at 445.102 kb on - strand, within Dshi_0458 at 445.107 kb on - strand, within Dshi_0458 at 445.173 kb on + strand, within Dshi_0458 at 445.178 kb on + strand, within Dshi_0458 at 445.181 kb on - strand, within Dshi_0458 at 445.183 kb on + strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.205 kb on + strand, within Dshi_0458 at 445.208 kb on - strand, within Dshi_0458 at 445.213 kb on - strand, within Dshi_0458 at 445.219 kb on - strand, within Dshi_0458 at 445.288 kb on - strand at 445.293 kb on + strand at 445.313 kb on - strand at 445.360 kb on - strand, within Dshi_0459 at 445.371 kb on - strand, within Dshi_0459 at 445.384 kb on + strand, within Dshi_0459 at 445.385 kb on + strand, within Dshi_0459 at 445.422 kb on + strand, within Dshi_0459 at 445.611 kb on + strand, within Dshi_0459 at 445.628 kb on - strand, within Dshi_0459 at 445.629 kb on - strand, within Dshi_0459 at 445.657 kb on + strand, within Dshi_0459 at 445.665 kb on - strand, within Dshi_0459 at 445.667 kb on + strand, within Dshi_0459 at 445.706 kb on - strand, within Dshi_0459 at 445.775 kb on - strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.805 kb on + strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.830 kb on - strand, within Dshi_0459 at 445.832 kb on + strand, within Dshi_0459 at 445.840 kb on - strand, within Dshi_0459 at 445.868 kb on - strand, within Dshi_0459
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 443,023 + +0.3 443,031 - +0.3 443,033 + +1.0 443,056 - -0.5 443,123 - +0.5 443,205 - Dshi_0456 0.17 -1.7 443,207 + Dshi_0456 0.18 -0.1 443,256 - Dshi_0456 0.23 -1.2 443,256 - Dshi_0456 0.23 +0.6 443,304 + Dshi_0456 0.28 -0.1 443,311 + Dshi_0456 0.28 +1.0 443,311 + Dshi_0456 0.28 -0.4 443,342 + Dshi_0456 0.32 +1.7 443,352 + Dshi_0456 0.33 -0.5 443,376 + Dshi_0456 0.35 -0.0 443,379 - Dshi_0456 0.36 -1.0 443,421 - Dshi_0456 0.40 -0.2 443,421 - Dshi_0456 0.40 +2.3 443,431 + Dshi_0456 0.41 -0.2 443,432 - Dshi_0456 0.41 -1.0 443,445 - Dshi_0456 0.42 -0.6 443,563 + Dshi_0456 0.55 -0.5 443,578 + Dshi_0456 0.56 +0.4 443,634 - Dshi_0456 0.62 -1.4 443,636 + Dshi_0456 0.62 -0.3 443,637 + Dshi_0456 0.62 +3.8 443,637 + Dshi_0456 0.62 -1.3 443,637 + Dshi_0456 0.62 +1.2 443,639 - Dshi_0456 0.63 +0.1 443,671 - Dshi_0456 0.66 -0.6 443,683 - Dshi_0456 0.67 -0.0 443,685 + Dshi_0456 0.68 -0.0 443,685 + Dshi_0456 0.68 +0.7 443,693 - Dshi_0456 0.68 -0.6 443,721 + Dshi_0456 0.71 +0.2 443,737 + Dshi_0456 0.73 +0.5 443,745 - Dshi_0456 0.74 -0.4 443,772 + Dshi_0456 0.77 +3.5 443,790 + Dshi_0456 0.78 -0.4 443,797 + Dshi_0456 0.79 -1.0 443,801 + Dshi_0456 0.80 -0.9 443,806 + Dshi_0456 0.80 +2.2 443,806 + Dshi_0456 0.80 +3.4 443,812 + Dshi_0456 0.81 +1.0 443,814 - Dshi_0456 0.81 -1.4 443,847 + Dshi_0456 0.84 -0.0 443,863 + Dshi_0456 0.86 +1.0 443,884 - Dshi_0456 0.88 +0.4 443,912 + +0.1 443,912 + +1.2 443,948 - +2.0 443,979 - +0.3 444,020 - -1.0 444,054 + +0.5 444,127 - Dshi_0457 0.15 +1.8 444,203 - Dshi_0457 0.23 +0.4 444,291 + Dshi_0457 0.33 +1.3 444,294 - Dshi_0457 0.33 -0.0 444,294 - Dshi_0457 0.33 +1.7 444,294 - Dshi_0457 0.33 -1.0 444,294 - Dshi_0457 0.33 -1.0 444,299 - Dshi_0457 0.34 +0.5 444,372 - Dshi_0457 0.42 -1.0 444,389 - Dshi_0457 0.44 +0.9 444,420 - Dshi_0457 0.47 +0.4 444,526 - Dshi_0457 0.59 -0.3 444,541 + Dshi_0457 0.60 -0.2 444,559 + Dshi_0457 0.62 -0.7 444,688 - Dshi_0457 0.77 +2.1 444,712 - Dshi_0457 0.79 +0.4 444,801 - Dshi_0457 0.89 +0.5 444,864 - -1.6 444,886 - +2.0 444,946 + Dshi_0458 0.13 -0.4 444,977 + Dshi_0458 0.22 +0.4 444,982 + Dshi_0458 0.23 -1.4 444,992 + Dshi_0458 0.26 +1.0 445,092 + Dshi_0458 0.52 +1.2 445,102 - Dshi_0458 0.55 -1.1 445,107 - Dshi_0458 0.56 +1.1 445,173 + Dshi_0458 0.74 +1.7 445,178 + Dshi_0458 0.76 -0.1 445,181 - Dshi_0458 0.76 -1.5 445,183 + Dshi_0458 0.77 -0.0 445,191 - Dshi_0458 0.79 -0.0 445,191 - Dshi_0458 0.79 +0.1 445,191 - Dshi_0458 0.79 -1.0 445,205 + Dshi_0458 0.83 -0.3 445,208 - Dshi_0458 0.84 +0.1 445,213 - Dshi_0458 0.85 -0.6 445,219 - Dshi_0458 0.87 -0.4 445,288 - -0.1 445,293 + +2.0 445,313 - +0.4 445,360 - Dshi_0459 0.10 -0.5 445,371 - Dshi_0459 0.11 -1.0 445,384 + Dshi_0459 0.13 +2.3 445,385 + Dshi_0459 0.13 +1.9 445,422 + Dshi_0459 0.17 -2.0 445,611 + Dshi_0459 0.36 +0.1 445,628 - Dshi_0459 0.38 +0.4 445,629 - Dshi_0459 0.38 +0.2 445,657 + Dshi_0459 0.41 -0.0 445,665 - Dshi_0459 0.42 -0.0 445,667 + Dshi_0459 0.42 -1.9 445,706 - Dshi_0459 0.46 +0.7 445,775 - Dshi_0459 0.53 -0.5 445,799 + Dshi_0459 0.56 +1.3 445,799 + Dshi_0459 0.56 -0.3 445,799 + Dshi_0459 0.56 -0.3 445,805 + Dshi_0459 0.56 +1.0 445,807 - Dshi_0459 0.57 +1.6 445,807 - Dshi_0459 0.57 -0.4 445,830 - Dshi_0459 0.59 -0.6 445,832 + Dshi_0459 0.59 -1.9 445,840 - Dshi_0459 0.60 -0.4 445,868 - Dshi_0459 0.63 +3.3
Or see this region's nucleotide sequence