Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0451

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0448 and Dshi_0449 are separated by 54 nucleotidesDshi_0449 and Dshi_0450 are separated by 103 nucleotidesDshi_0450 and Dshi_0451 are separated by 26 nucleotidesDshi_0451 and Dshi_0452 overlap by 1 nucleotidesDshi_0452 and Dshi_0453 overlap by 4 nucleotides Dshi_0448: Dshi_0448 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 436,086 to 437,696 _0448 Dshi_0449: Dshi_0449 - two component transcriptional regulator, winged helix family (RefSeq), at 437,751 to 438,434 _0449 Dshi_0450: Dshi_0450 - coenzyme PQQ biosynthesis protein A (RefSeq), at 438,538 to 438,636 _0450 Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556 _0451 Dshi_0452: Dshi_0452 - coenzyme PQQ biosynthesis protein C (RefSeq), at 439,556 to 440,308 _0452 Dshi_0453: Dshi_0453 - coenzyme PQQ synthesis D (RefSeq), at 440,305 to 440,583 _0453 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 437.735 kb on - strandat 437.735 kb on - strandat 437.772 kb on + strandat 437.909 kb on - strand, within Dshi_0449at 437.995 kb on - strand, within Dshi_0449at 438.112 kb on - strand, within Dshi_0449at 438.125 kb on + strand, within Dshi_0449at 438.151 kb on - strand, within Dshi_0449at 438.152 kb on - strand, within Dshi_0449at 438.179 kb on - strand, within Dshi_0449at 438.181 kb on + strand, within Dshi_0449at 438.189 kb on - strand, within Dshi_0449at 438.272 kb on + strand, within Dshi_0449at 438.280 kb on - strand, within Dshi_0449at 438.298 kb on - strand, within Dshi_0449at 438.309 kb on + strand, within Dshi_0449at 438.322 kb on - strand, within Dshi_0449at 438.373 kb on + strandat 438.378 kb on + strandat 438.386 kb on - strandat 438.420 kb on + strandat 438.420 kb on - strandat 438.428 kb on - strandat 438.428 kb on - strandat 438.430 kb on + strandat 438.430 kb on + strandat 438.430 kb on + strandat 438.462 kb on + strandat 438.471 kb on - strandat 438.486 kb on + strandat 438.490 kb on + strandat 438.525 kb on - strandat 438.553 kb on - strand, within Dshi_0450at 438.553 kb on - strandat 438.561 kb on - strand, within Dshi_0450at 438.591 kb on + strand, within Dshi_0450at 438.599 kb on + strand, within Dshi_0450at 438.606 kb on - strand, within Dshi_0450at 438.608 kb on + strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.630 kb on + strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.651 kb on + strandat 438.659 kb on - strandat 438.737 kb on + strandat 438.743 kb on + strandat 438.752 kb on + strandat 438.773 kb on + strand, within Dshi_0451at 438.774 kb on + strand, within Dshi_0451at 438.776 kb on - strand, within Dshi_0451at 438.782 kb on - strand, within Dshi_0451at 438.829 kb on - strand, within Dshi_0451at 438.870 kb on - strand, within Dshi_0451at 438.875 kb on + strand, within Dshi_0451at 438.877 kb on + strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.892 kb on + strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.909 kb on + strand, within Dshi_0451at 438.944 kb on + strand, within Dshi_0451at 438.948 kb on + strand, within Dshi_0451at 438.956 kb on - strand, within Dshi_0451at 438.983 kb on - strand, within Dshi_0451at 439.051 kb on - strand, within Dshi_0451at 439.145 kb on - strand, within Dshi_0451at 439.148 kb on + strand, within Dshi_0451at 439.154 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.236 kb on + strand, within Dshi_0451at 439.240 kb on - strand, within Dshi_0451at 439.250 kb on - strand, within Dshi_0451at 439.265 kb on + strand, within Dshi_0451at 439.313 kb on + strand, within Dshi_0451at 439.326 kb on + strand, within Dshi_0451at 439.370 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.425 kb on - strand, within Dshi_0451at 439.505 kb on + strandat 439.526 kb on - strandat 439.539 kb on + strandat 439.550 kb on + strandat 439.567 kb on - strandat 439.618 kb on - strandat 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.670 kb on - strand, within Dshi_0452at 439.680 kb on - strand, within Dshi_0452at 439.681 kb on - strand, within Dshi_0452at 439.708 kb on + strand, within Dshi_0452at 439.733 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.771 kb on + strand, within Dshi_0452at 439.846 kb on + strand, within Dshi_0452at 439.927 kb on - strand, within Dshi_0452at 440.048 kb on + strand, within Dshi_0452at 440.109 kb on + strand, within Dshi_0452at 440.117 kb on - strand, within Dshi_0452at 440.126 kb on - strand, within Dshi_0452at 440.301 kb on - strandat 440.324 kb on + strandat 440.332 kb on - strandat 440.375 kb on + strand, within Dshi_0453at 440.416 kb on - strandat 440.464 kb on + strand, within Dshi_0453at 440.478 kb on + strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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437,735 - +0.3
437,735 - -1.0
437,772 + -1.0
437,909 - Dshi_0449 0.23 -0.2
437,995 - Dshi_0449 0.36 -1.9
438,112 - Dshi_0449 0.53 -1.7
438,125 + Dshi_0449 0.55 -1.7
438,151 - Dshi_0449 0.58 -0.9
438,152 - Dshi_0449 0.59 -0.6
438,179 - Dshi_0449 0.63 -0.0
438,181 + Dshi_0449 0.63 -1.7
438,189 - Dshi_0449 0.64 -1.0
438,272 + Dshi_0449 0.76 +1.9
438,280 - Dshi_0449 0.77 -0.1
438,298 - Dshi_0449 0.80 -1.2
438,309 + Dshi_0449 0.82 +0.6
438,322 - Dshi_0449 0.83 -1.8
438,373 + -0.4
438,378 + -0.8
438,386 - +0.3
438,420 + -1.3
438,420 - +1.5
438,428 - -0.6
438,428 - -0.7
438,430 + -0.4
438,430 + -0.6
438,430 + -1.5
438,462 + +0.2
438,471 - -0.7
438,486 + -1.4
438,490 + -0.5
438,525 - +0.5
438,553 - Dshi_0450 0.15 -1.5
438,553 - +2.0
438,561 - Dshi_0450 0.23 -2.5
438,591 + Dshi_0450 0.54 -1.0
438,599 + Dshi_0450 0.62 -0.8
438,606 - Dshi_0450 0.69 +0.1
438,608 + Dshi_0450 0.71 -0.5
438,616 - Dshi_0450 0.79 -1.2
438,616 - Dshi_0450 0.79 +0.5
438,625 + Dshi_0450 0.88 -0.2
438,625 + Dshi_0450 0.88 -0.8
438,625 + Dshi_0450 0.88 +0.3
438,625 + Dshi_0450 0.88 -1.0
438,625 + Dshi_0450 0.88 -0.6
438,630 + +0.5
438,633 - -1.1
438,633 - -0.7
438,633 - +0.2
438,651 + -0.6
438,659 - -0.7
438,737 + -1.2
438,743 + +0.6
438,752 + -1.3
438,773 + Dshi_0451 0.12 +0.8
438,774 + Dshi_0451 0.12 +0.3
438,776 - Dshi_0451 0.13 -1.6
438,782 - Dshi_0451 0.13 +0.1
438,829 - Dshi_0451 0.19 -0.6
438,870 - Dshi_0451 0.23 -0.5
438,875 + Dshi_0451 0.24 -0.2
438,877 + Dshi_0451 0.24 -0.8
438,880 - Dshi_0451 0.24 -0.1
438,880 - Dshi_0451 0.24 -0.5
438,890 - Dshi_0451 0.25 -2.3
438,890 - Dshi_0451 0.25 -0.9
438,892 + Dshi_0451 0.26 +1.5
438,900 - Dshi_0451 0.27 +1.4
438,900 - Dshi_0451 0.27 -0.8
438,900 - Dshi_0451 0.27 -1.4
438,909 + Dshi_0451 0.28 -1.0
438,944 + Dshi_0451 0.31 -0.1
438,948 + Dshi_0451 0.32 -1.0
438,956 - Dshi_0451 0.33 -1.3
438,983 - Dshi_0451 0.36 -2.7
439,051 - Dshi_0451 0.43 -0.0
439,145 - Dshi_0451 0.54 -1.7
439,148 + Dshi_0451 0.54 -1.3
439,154 + Dshi_0451 0.55 +0.4
439,190 + Dshi_0451 0.59 -0.5
439,190 + Dshi_0451 0.59 -0.3
439,236 + Dshi_0451 0.64 +3.1
439,240 - Dshi_0451 0.65 +0.5
439,250 - Dshi_0451 0.66 -1.6
439,265 + Dshi_0451 0.67 -0.0
439,313 + Dshi_0451 0.73 +1.0
439,326 + Dshi_0451 0.74 +0.6
439,370 + Dshi_0451 0.79 +0.2
439,393 + Dshi_0451 0.82 -0.3
439,393 + Dshi_0451 0.82 -0.7
439,393 + Dshi_0451 0.82 -1.9
439,393 + Dshi_0451 0.82 -0.2
439,393 + Dshi_0451 0.82 -2.0
439,393 + Dshi_0451 0.82 -1.9
439,425 - Dshi_0451 0.85 -0.6
439,505 + -0.7
439,526 - -1.9
439,539 + +0.9
439,550 + -0.6
439,567 - -0.5
439,618 - -1.0
439,662 + Dshi_0452 0.14 -3.0
439,662 + Dshi_0452 0.14 +1.5
439,662 + Dshi_0452 0.14 -1.4
439,662 + Dshi_0452 0.14 +0.5
439,670 - Dshi_0452 0.15 +0.3
439,680 - Dshi_0452 0.16 +0.3
439,681 - Dshi_0452 0.17 +0.4
439,708 + Dshi_0452 0.20 -1.4
439,733 + Dshi_0452 0.24 -0.6
439,755 + Dshi_0452 0.26 -1.8
439,755 + Dshi_0452 0.26 -0.5
439,763 - Dshi_0452 0.27 -1.0
439,763 - Dshi_0452 0.27 -1.0
439,771 + Dshi_0452 0.29 -0.8
439,846 + Dshi_0452 0.39 -0.7
439,927 - Dshi_0452 0.49 -1.4
440,048 + Dshi_0452 0.65 -1.1
440,109 + Dshi_0452 0.73 -1.6
440,117 - Dshi_0452 0.75 +3.9
440,126 - Dshi_0452 0.76 -0.3
440,301 - -1.4
440,324 + -2.5
440,332 - +1.0
440,375 + Dshi_0453 0.25 +3.3
440,416 - +0.5
440,464 + Dshi_0453 0.57 -1.0
440,478 + Dshi_0453 0.62 -0.0
440,481 - Dshi_0453 0.63 -0.8
440,481 - Dshi_0453 0.63 +1.1

Or see this region's nucleotide sequence