Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0437 and Dshi_0438 overlap by 4 nucleotides Dshi_0438 and Dshi_0439 overlap by 10 nucleotides Dshi_0439 and Dshi_0440 overlap by 4 nucleotides Dshi_0440 and Dshi_0441 are separated by 4 nucleotides Dshi_0441 and Dshi_0442 overlap by 11 nucleotides
Dshi_0437: Dshi_0437 - F0F1-ATPase subunit, putative (RefSeq), at 428,909 to 429,196
_0437
Dshi_0438: Dshi_0438 - hypothetical protein (RefSeq), at 429,193 to 429,498
_0438
Dshi_0439: Dshi_0439 - ATP synthase F0, A subunit (RefSeq), at 429,489 to 430,178
_0439
Dshi_0440: Dshi_0440 - ATP synthase F0, C subunit (RefSeq), at 430,175 to 430,465
_0440
Dshi_0441: Dshi_0441 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 430,470 to 431,237
_0441
Dshi_0442: Dshi_0442 - ATP synthase F1, alpha subunit (RefSeq), at 431,227 to 432,756
_0442
Position (kb) 430
431 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 429.183 kb on - strand at 429.273 kb on + strand, within Dshi_0438 at 429.281 kb on - strand, within Dshi_0438 at 429.330 kb on + strand, within Dshi_0438 at 429.332 kb on + strand, within Dshi_0438 at 429.342 kb on + strand, within Dshi_0438 at 429.411 kb on - strand, within Dshi_0438 at 429.492 kb on + strand at 429.533 kb on - strand at 429.587 kb on - strand, within Dshi_0439 at 429.607 kb on + strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.652 kb on + strand, within Dshi_0439 at 429.749 kb on + strand, within Dshi_0439 at 429.760 kb on + strand, within Dshi_0439 at 429.775 kb on + strand, within Dshi_0439 at 429.778 kb on - strand, within Dshi_0439 at 429.787 kb on + strand, within Dshi_0439 at 429.810 kb on + strand, within Dshi_0439 at 429.882 kb on - strand, within Dshi_0439 at 429.904 kb on + strand, within Dshi_0439 at 430.025 kb on + strand, within Dshi_0439 at 430.064 kb on - strand, within Dshi_0439 at 430.228 kb on - strand, within Dshi_0440 at 430.256 kb on - strand, within Dshi_0440 at 430.358 kb on + strand, within Dshi_0440 at 430.460 kb on + strand at 430.460 kb on + strand at 430.468 kb on - strand at 430.483 kb on + strand at 430.552 kb on + strand, within Dshi_0441 at 430.560 kb on - strand, within Dshi_0441 at 430.573 kb on + strand, within Dshi_0441 at 430.610 kb on + strand, within Dshi_0441 at 430.668 kb on + strand, within Dshi_0441 at 430.673 kb on + strand, within Dshi_0441 at 431.089 kb on - strand, within Dshi_0441 at 431.110 kb on - strand, within Dshi_0441 at 431.143 kb on + strand, within Dshi_0441 at 431.159 kb on - strand, within Dshi_0441 at 431.190 kb on - strand at 431.230 kb on + strand at 431.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 429,183 - -1.6 429,273 + Dshi_0438 0.26 -0.9 429,281 - Dshi_0438 0.29 -1.6 429,330 + Dshi_0438 0.45 -3.2 429,332 + Dshi_0438 0.45 -2.4 429,342 + Dshi_0438 0.49 +1.4 429,411 - Dshi_0438 0.71 -0.9 429,492 + +0.4 429,533 - -0.2 429,587 - Dshi_0439 0.14 -0.0 429,607 + Dshi_0439 0.17 -2.2 429,615 - Dshi_0439 0.18 +0.1 429,615 - Dshi_0439 0.18 -1.0 429,615 - Dshi_0439 0.18 +2.0 429,615 - Dshi_0439 0.18 -3.4 429,652 + Dshi_0439 0.24 -1.4 429,749 + Dshi_0439 0.38 -2.4 429,760 + Dshi_0439 0.39 +1.0 429,775 + Dshi_0439 0.41 -0.0 429,778 - Dshi_0439 0.42 -2.6 429,787 + Dshi_0439 0.43 -1.5 429,810 + Dshi_0439 0.47 -1.0 429,882 - Dshi_0439 0.57 -1.0 429,904 + Dshi_0439 0.60 -2.2 430,025 + Dshi_0439 0.78 -0.0 430,064 - Dshi_0439 0.83 -2.3 430,228 - Dshi_0440 0.18 -0.0 430,256 - Dshi_0440 0.28 -3.3 430,358 + Dshi_0440 0.63 -0.5 430,460 + +1.0 430,460 + +1.5 430,468 - -1.1 430,483 + -0.6 430,552 + Dshi_0441 0.11 -0.0 430,560 - Dshi_0441 0.12 -0.0 430,573 + Dshi_0441 0.13 -0.0 430,610 + Dshi_0441 0.18 +1.0 430,668 + Dshi_0441 0.26 -2.6 430,673 + Dshi_0441 0.26 -1.6 431,089 - Dshi_0441 0.81 -0.0 431,110 - Dshi_0441 0.83 -1.6 431,143 + Dshi_0441 0.88 -4.0 431,159 - Dshi_0441 0.90 -2.4 431,190 - -0.0 431,230 + -0.6 431,300 + -1.9
Or see this region's nucleotide sequence