Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0433

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0432 and Dshi_0433 are separated by 13 nucleotidesDshi_0433 and Dshi_0434 are separated by 3 nucleotides Dshi_0432: Dshi_0432 - Arginine deiminase (RefSeq), at 423,677 to 424,906 _0432 Dshi_0433: Dshi_0433 - ornithine carbamoyltransferase (RefSeq), at 424,920 to 425,921 _0433 Dshi_0434: Dshi_0434 - carbamate kinase (RefSeq), at 425,925 to 426,863 _0434 Position (kb) 424 425 426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 423.923 kb on - strand, within Dshi_0432at 424.017 kb on + strand, within Dshi_0432at 424.025 kb on - strand, within Dshi_0432at 424.097 kb on + strand, within Dshi_0432at 424.100 kb on - strand, within Dshi_0432at 424.113 kb on + strand, within Dshi_0432at 424.121 kb on - strand, within Dshi_0432at 424.179 kb on - strand, within Dshi_0432at 424.185 kb on + strand, within Dshi_0432at 424.290 kb on - strand, within Dshi_0432at 424.305 kb on + strand, within Dshi_0432at 424.328 kb on - strand, within Dshi_0432at 424.332 kb on - strand, within Dshi_0432at 424.356 kb on + strand, within Dshi_0432at 424.512 kb on - strand, within Dshi_0432at 424.533 kb on + strand, within Dshi_0432at 424.541 kb on - strand, within Dshi_0432at 424.610 kb on + strand, within Dshi_0432at 424.627 kb on + strand, within Dshi_0432at 424.633 kb on + strand, within Dshi_0432at 424.646 kb on + strand, within Dshi_0432at 424.675 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.899 kb on + strandat 424.899 kb on + strandat 424.901 kb on + strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.924 kb on + strandat 424.948 kb on + strandat 425.043 kb on - strand, within Dshi_0433at 425.043 kb on - strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.139 kb on + strand, within Dshi_0433at 425.157 kb on - strand, within Dshi_0433at 425.188 kb on - strand, within Dshi_0433at 425.216 kb on - strand, within Dshi_0433at 425.275 kb on - strand, within Dshi_0433at 425.307 kb on - strand, within Dshi_0433at 425.317 kb on + strand, within Dshi_0433at 425.325 kb on - strand, within Dshi_0433at 425.336 kb on - strand, within Dshi_0433at 425.391 kb on + strand, within Dshi_0433at 425.415 kb on + strand, within Dshi_0433at 425.422 kb on + strand, within Dshi_0433at 425.428 kb on - strand, within Dshi_0433at 425.435 kb on - strand, within Dshi_0433at 425.450 kb on + strand, within Dshi_0433at 425.459 kb on + strand, within Dshi_0433at 425.467 kb on + strand, within Dshi_0433at 425.492 kb on + strandat 425.497 kb on + strand, within Dshi_0433at 425.499 kb on - strand, within Dshi_0433at 425.505 kb on - strand, within Dshi_0433at 425.526 kb on - strand, within Dshi_0433at 425.536 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.564 kb on + strand, within Dshi_0433at 425.574 kb on + strand, within Dshi_0433at 425.630 kb on + strand, within Dshi_0433at 425.682 kb on - strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.784 kb on + strand, within Dshi_0433at 425.803 kb on - strand, within Dshi_0433at 425.817 kb on - strand, within Dshi_0433at 425.898 kb on - strandat 425.923 kb on - strandat 425.928 kb on - strandat 425.928 kb on - strandat 425.968 kb on - strandat 426.029 kb on + strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.063 kb on - strand, within Dshi_0434at 426.086 kb on + strand, within Dshi_0434at 426.114 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.221 kb on - strand, within Dshi_0434at 426.242 kb on + strand, within Dshi_0434at 426.350 kb on - strand, within Dshi_0434at 426.363 kb on + strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.856 kb on - strandat 426.882 kb on + strandat 426.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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423,923 - Dshi_0432 0.20 -1.9
424,017 + Dshi_0432 0.28 -2.2
424,025 - Dshi_0432 0.28 -0.6
424,097 + Dshi_0432 0.34 -1.9
424,100 - Dshi_0432 0.34 -0.8
424,113 + Dshi_0432 0.35 +1.0
424,121 - Dshi_0432 0.36 -1.2
424,179 - Dshi_0432 0.41 -3.1
424,185 + Dshi_0432 0.41 -0.7
424,290 - Dshi_0432 0.50 +0.8
424,305 + Dshi_0432 0.51 -3.0
424,328 - Dshi_0432 0.53 -2.4
424,332 - Dshi_0432 0.53 -1.0
424,356 + Dshi_0432 0.55 -1.7
424,512 - Dshi_0432 0.68 +0.1
424,533 + Dshi_0432 0.70 -0.9
424,541 - Dshi_0432 0.70 +1.0
424,610 + Dshi_0432 0.76 -0.0
424,627 + Dshi_0432 0.77 -1.0
424,633 + Dshi_0432 0.78 -1.0
424,646 + Dshi_0432 0.79 +1.3
424,675 + Dshi_0432 0.81 -2.1
424,686 + Dshi_0432 0.82 -1.2
424,686 + Dshi_0432 0.82 -0.3
424,899 + -1.6
424,899 + +0.7
424,901 + -0.8
424,909 - +0.1
424,909 - +0.2
424,909 - -0.3
424,909 - +1.4
424,924 + -1.2
424,948 + -3.0
425,043 - Dshi_0433 0.12 -0.6
425,043 - Dshi_0433 0.12 -1.1
425,122 + Dshi_0433 0.20 -1.0
425,122 + Dshi_0433 0.20 -3.4
425,122 + Dshi_0433 0.20 -1.1
425,122 + Dshi_0433 0.20 -0.7
425,130 - Dshi_0433 0.21 -0.8
425,130 - Dshi_0433 0.21 -0.7
425,139 + Dshi_0433 0.22 -0.9
425,157 - Dshi_0433 0.24 -1.4
425,188 - Dshi_0433 0.27 -0.8
425,216 - Dshi_0433 0.30 -1.7
425,275 - Dshi_0433 0.35 -0.7
425,307 - Dshi_0433 0.39 -1.0
425,317 + Dshi_0433 0.40 -0.1
425,325 - Dshi_0433 0.40 +0.7
425,336 - Dshi_0433 0.42 -1.0
425,391 + Dshi_0433 0.47 -2.8
425,415 + Dshi_0433 0.49 -2.1
425,422 + Dshi_0433 0.50 -0.9
425,428 - Dshi_0433 0.51 -0.7
425,435 - Dshi_0433 0.51 -0.9
425,450 + Dshi_0433 0.53 -2.0
425,459 + Dshi_0433 0.54 -1.0
425,467 + Dshi_0433 0.55 -2.5
425,492 + -0.0
425,497 + Dshi_0433 0.58 -0.5
425,499 - Dshi_0433 0.58 -0.0
425,505 - Dshi_0433 0.58 -2.0
425,526 - Dshi_0433 0.60 -0.3
425,536 - Dshi_0433 0.61 -1.7
425,548 - Dshi_0433 0.63 -0.3
425,548 - Dshi_0433 0.63 +0.3
425,548 - Dshi_0433 0.63 -1.0
425,564 + Dshi_0433 0.64 +1.0
425,574 + Dshi_0433 0.65 -1.5
425,630 + Dshi_0433 0.71 -2.4
425,682 - Dshi_0433 0.76 -0.6
425,684 + Dshi_0433 0.76 -1.8
425,684 + Dshi_0433 0.76 +0.5
425,784 + Dshi_0433 0.86 -3.9
425,803 - Dshi_0433 0.88 -1.5
425,817 - Dshi_0433 0.90 +0.7
425,898 - +0.2
425,923 - -0.7
425,928 - -2.0
425,928 - -0.7
425,968 - -1.0
426,029 + Dshi_0434 0.11 +1.2
426,037 - Dshi_0434 0.12 -0.9
426,037 - Dshi_0434 0.12 -1.8
426,063 - Dshi_0434 0.15 -0.6
426,086 + Dshi_0434 0.17 -2.5
426,114 + Dshi_0434 0.20 -1.9
426,213 + Dshi_0434 0.31 -0.0
426,213 + Dshi_0434 0.31 -0.0
426,221 - Dshi_0434 0.32 -3.0
426,242 + Dshi_0434 0.34 -0.4
426,350 - Dshi_0434 0.45 -0.5
426,363 + Dshi_0434 0.47 -2.4
426,456 - Dshi_0434 0.57 +1.8
426,456 - Dshi_0434 0.57 -0.3
426,856 - +1.1
426,882 + +1.0
426,882 + -1.4

Or see this region's nucleotide sequence