Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0431

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0429 and Dshi_0430 are separated by 22 nucleotidesDshi_0430 and Dshi_0431 are separated by 203 nucleotidesDshi_0431 and Dshi_0432 are separated by 15 nucleotides Dshi_0429: Dshi_0429 - uncharacterized conserved coiled coil protein (RefSeq), at 421,265 to 421,552 _0429 Dshi_0430: Dshi_0430 - hypothetical protein (RefSeq), at 421,575 to 422,009 _0430 Dshi_0431: Dshi_0431 - C4-dicarboxylate anaerobic carrier (RefSeq), at 422,213 to 423,661 _0431 Dshi_0432: Dshi_0432 - Arginine deiminase (RefSeq), at 423,677 to 424,906 _0432 Position (kb) 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 421.232 kb on + strandat 421.245 kb on - strandat 421.251 kb on - strandat 421.251 kb on - strandat 421.259 kb on - strandat 421.263 kb on + strandat 421.271 kb on - strandat 421.320 kb on + strand, within Dshi_0429at 421.351 kb on - strand, within Dshi_0429at 421.355 kb on + strand, within Dshi_0429at 421.415 kb on - strand, within Dshi_0429at 421.536 kb on + strandat 421.555 kb on + strandat 421.573 kb on + strandat 421.573 kb on + strandat 421.581 kb on - strandat 421.582 kb on + strandat 421.582 kb on + strandat 421.590 kb on - strandat 421.590 kb on - strandat 421.599 kb on - strandat 421.600 kb on + strandat 421.610 kb on - strandat 421.752 kb on - strand, within Dshi_0430at 421.796 kb on - strand, within Dshi_0430at 421.801 kb on - strand, within Dshi_0430at 421.923 kb on - strand, within Dshi_0430at 421.956 kb on + strand, within Dshi_0430at 421.969 kb on - strandat 422.007 kb on - strandat 422.007 kb on - strandat 422.068 kb on + strandat 422.081 kb on - strandat 422.081 kb on - strandat 422.094 kb on + strandat 422.121 kb on + strandat 422.129 kb on - strandat 422.160 kb on - strandat 422.253 kb on + strandat 422.266 kb on + strandat 422.315 kb on + strandat 422.315 kb on + strandat 422.323 kb on - strandat 422.325 kb on + strandat 422.325 kb on + strandat 422.328 kb on - strandat 422.366 kb on + strand, within Dshi_0431at 422.434 kb on - strand, within Dshi_0431at 422.464 kb on + strand, within Dshi_0431at 422.478 kb on + strand, within Dshi_0431at 422.479 kb on - strand, within Dshi_0431at 422.517 kb on - strand, within Dshi_0431at 422.558 kb on - strand, within Dshi_0431at 422.592 kb on + strand, within Dshi_0431at 422.784 kb on + strand, within Dshi_0431at 422.798 kb on - strand, within Dshi_0431at 422.924 kb on - strand, within Dshi_0431at 422.939 kb on - strand, within Dshi_0431at 423.028 kb on + strand, within Dshi_0431at 423.090 kb on - strand, within Dshi_0431at 423.103 kb on + strand, within Dshi_0431at 423.106 kb on - strand, within Dshi_0431at 423.112 kb on - strand, within Dshi_0431at 423.116 kb on + strand, within Dshi_0431at 423.124 kb on - strand, within Dshi_0431at 423.124 kb on - strand, within Dshi_0431at 423.165 kb on + strand, within Dshi_0431at 423.232 kb on + strand, within Dshi_0431at 423.299 kb on + strand, within Dshi_0431at 423.304 kb on + strand, within Dshi_0431at 423.377 kb on + strand, within Dshi_0431at 423.385 kb on - strand, within Dshi_0431at 423.410 kb on - strand, within Dshi_0431at 423.427 kb on + strand, within Dshi_0431at 423.491 kb on - strand, within Dshi_0431at 423.515 kb on - strand, within Dshi_0431at 423.625 kb on + strandat 423.656 kb on - strandat 423.668 kb on - strandat 423.684 kb on + strandat 423.690 kb on + strandat 423.805 kb on + strand, within Dshi_0432at 423.824 kb on + strand, within Dshi_0432at 423.832 kb on - strand, within Dshi_0432at 423.866 kb on - strand, within Dshi_0432at 423.901 kb on - strand, within Dshi_0432at 423.903 kb on - strand, within Dshi_0432at 423.915 kb on + strand, within Dshi_0432at 423.923 kb on - strand, within Dshi_0432at 424.017 kb on + strand, within Dshi_0432at 424.025 kb on - strand, within Dshi_0432at 424.097 kb on + strand, within Dshi_0432at 424.100 kb on - strand, within Dshi_0432at 424.113 kb on + strand, within Dshi_0432at 424.121 kb on - strand, within Dshi_0432at 424.179 kb on - strand, within Dshi_0432at 424.185 kb on + strand, within Dshi_0432at 424.290 kb on - strand, within Dshi_0432at 424.305 kb on + strand, within Dshi_0432at 424.328 kb on - strand, within Dshi_0432at 424.332 kb on - strand, within Dshi_0432at 424.356 kb on + strand, within Dshi_0432at 424.512 kb on - strand, within Dshi_0432at 424.533 kb on + strand, within Dshi_0432at 424.541 kb on - strand, within Dshi_0432at 424.610 kb on + strand, within Dshi_0432at 424.627 kb on + strand, within Dshi_0432at 424.633 kb on + strand, within Dshi_0432at 424.646 kb on + strand, within Dshi_0432

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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421,232 + -1.6
421,245 - -1.3
421,251 - -1.0
421,251 - -1.9
421,259 - -1.2
421,263 + -2.6
421,271 - -0.5
421,320 + Dshi_0429 0.19 -2.1
421,351 - Dshi_0429 0.30 -1.6
421,355 + Dshi_0429 0.31 +1.1
421,415 - Dshi_0429 0.52 -1.5
421,536 + +0.5
421,555 + -0.0
421,573 + -1.0
421,573 + -0.3
421,581 - -2.5
421,582 + +1.1
421,582 + -0.8
421,590 - -1.3
421,590 - -0.7
421,599 - -0.3
421,600 + -0.1
421,610 - -1.0
421,752 - Dshi_0430 0.41 -0.7
421,796 - Dshi_0430 0.51 -2.9
421,801 - Dshi_0430 0.52 -1.5
421,923 - Dshi_0430 0.80 -1.0
421,956 + Dshi_0430 0.88 -1.5
421,969 - -1.0
422,007 - -2.7
422,007 - -0.2
422,068 + -1.1
422,081 - -0.8
422,081 - +1.3
422,094 + -0.8
422,121 + -0.8
422,129 - -2.3
422,160 - -0.0
422,253 + +0.5
422,266 + -0.0
422,315 + -0.0
422,315 + -2.2
422,323 - -4.3
422,325 + -1.2
422,325 + -0.0
422,328 - -0.0
422,366 + Dshi_0431 0.11 -0.5
422,434 - Dshi_0431 0.15 +1.5
422,464 + Dshi_0431 0.17 -1.1
422,478 + Dshi_0431 0.18 -0.3
422,479 - Dshi_0431 0.18 +2.1
422,517 - Dshi_0431 0.21 -0.4
422,558 - Dshi_0431 0.24 -1.2
422,592 + Dshi_0431 0.26 +2.5
422,784 + Dshi_0431 0.39 -0.9
422,798 - Dshi_0431 0.40 -1.1
422,924 - Dshi_0431 0.49 -1.4
422,939 - Dshi_0431 0.50 +1.8
423,028 + Dshi_0431 0.56 +0.2
423,090 - Dshi_0431 0.61 -2.9
423,103 + Dshi_0431 0.61 -0.5
423,106 - Dshi_0431 0.62 -0.8
423,112 - Dshi_0431 0.62 -1.0
423,116 + Dshi_0431 0.62 -2.4
423,124 - Dshi_0431 0.63 +0.6
423,124 - Dshi_0431 0.63 +1.3
423,165 + Dshi_0431 0.66 -0.6
423,232 + Dshi_0431 0.70 -0.7
423,299 + Dshi_0431 0.75 -1.5
423,304 + Dshi_0431 0.75 -2.4
423,377 + Dshi_0431 0.80 -0.8
423,385 - Dshi_0431 0.81 -1.8
423,410 - Dshi_0431 0.83 +0.4
423,427 + Dshi_0431 0.84 -2.0
423,491 - Dshi_0431 0.88 -0.0
423,515 - Dshi_0431 0.90 -0.7
423,625 + +0.8
423,656 - +0.8
423,668 - -2.4
423,684 + -0.0
423,690 + -1.9
423,805 + Dshi_0432 0.10 -0.3
423,824 + Dshi_0432 0.12 -2.3
423,832 - Dshi_0432 0.13 -1.0
423,866 - Dshi_0432 0.15 +1.3
423,901 - Dshi_0432 0.18 -1.8
423,903 - Dshi_0432 0.18 -1.3
423,915 + Dshi_0432 0.19 +1.0
423,923 - Dshi_0432 0.20 -1.9
424,017 + Dshi_0432 0.28 -2.2
424,025 - Dshi_0432 0.28 -0.6
424,097 + Dshi_0432 0.34 -1.9
424,100 - Dshi_0432 0.34 -0.8
424,113 + Dshi_0432 0.35 +1.0
424,121 - Dshi_0432 0.36 -1.2
424,179 - Dshi_0432 0.41 -3.1
424,185 + Dshi_0432 0.41 -0.7
424,290 - Dshi_0432 0.50 +0.8
424,305 + Dshi_0432 0.51 -3.0
424,328 - Dshi_0432 0.53 -2.4
424,332 - Dshi_0432 0.53 -1.0
424,356 + Dshi_0432 0.55 -1.7
424,512 - Dshi_0432 0.68 +0.1
424,533 + Dshi_0432 0.70 -0.9
424,541 - Dshi_0432 0.70 +1.0
424,610 + Dshi_0432 0.76 -0.0
424,627 + Dshi_0432 0.77 -1.0
424,633 + Dshi_0432 0.78 -1.0
424,646 + Dshi_0432 0.79 +1.3

Or see this region's nucleotide sequence