Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0415 and Dshi_0416 are separated by 345 nucleotides Dshi_0416 and Dshi_0417 are separated by 83 nucleotides Dshi_0417 and Dshi_0418 are separated by 74 nucleotides
Dshi_0415: Dshi_0415 - hypothetical protein (RefSeq), at 409,020 to 409,262
_0415
Dshi_0416: Dshi_0416 - protein of unknown function DUF1127 (RefSeq), at 409,608 to 409,919
_0416
Dshi_0417: Dshi_0417 - hypothetical protein (RefSeq), at 410,003 to 410,209
_0417
Dshi_0418: Dshi_0418 - UspA domain protein (RefSeq), at 410,284 to 411,177
_0418
Position (kb) 410
411 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 409.015 kb on + strand at 409.025 kb on - strand at 409.073 kb on - strand, within Dshi_0415 at 409.074 kb on - strand, within Dshi_0415 at 409.107 kb on - strand, within Dshi_0415 at 409.135 kb on + strand, within Dshi_0415 at 409.143 kb on - strand, within Dshi_0415 at 409.155 kb on + strand, within Dshi_0415 at 409.210 kb on + strand, within Dshi_0415 at 409.218 kb on - strand, within Dshi_0415 at 409.220 kb on + strand, within Dshi_0415 at 409.228 kb on - strand, within Dshi_0415 at 409.232 kb on + strand at 409.232 kb on + strand, within Dshi_0415 at 409.235 kb on - strand, within Dshi_0415 at 409.240 kb on - strand at 409.242 kb on + strand at 409.249 kb on - strand at 409.264 kb on - strand at 409.264 kb on - strand at 409.277 kb on - strand at 409.291 kb on - strand at 409.291 kb on - strand at 409.291 kb on - strand at 409.298 kb on - strand at 409.298 kb on - strand at 409.298 kb on - strand at 409.326 kb on + strand at 409.350 kb on + strand at 409.396 kb on + strand at 409.399 kb on + strand at 409.407 kb on + strand at 409.429 kb on + strand at 409.429 kb on + strand at 409.429 kb on + strand at 409.437 kb on - strand at 409.448 kb on - strand at 409.448 kb on - strand at 409.449 kb on + strand at 409.511 kb on + strand at 409.531 kb on - strand at 409.566 kb on + strand at 409.572 kb on - strand at 409.587 kb on - strand at 409.587 kb on - strand at 409.597 kb on - strand at 409.600 kb on - strand at 409.624 kb on - strand at 409.676 kb on - strand, within Dshi_0416 at 409.680 kb on + strand, within Dshi_0416 at 409.688 kb on - strand, within Dshi_0416 at 409.688 kb on - strand, within Dshi_0416 at 409.901 kb on - strand at 409.928 kb on - strand at 409.973 kb on + strand at 409.991 kb on - strand at 409.996 kb on - strand at 410.006 kb on - strand at 410.042 kb on + strand, within Dshi_0417 at 410.044 kb on - strand, within Dshi_0417 at 410.055 kb on - strand, within Dshi_0417 at 410.067 kb on - strand, within Dshi_0417 at 410.103 kb on - strand, within Dshi_0417 at 410.109 kb on - strand, within Dshi_0417 at 410.169 kb on - strand, within Dshi_0417 at 410.326 kb on - strand at 410.328 kb on + strand at 410.336 kb on - strand at 410.461 kb on + strand, within Dshi_0418 at 410.501 kb on + strand, within Dshi_0418 at 410.509 kb on - strand, within Dshi_0418 at 410.551 kb on - strand, within Dshi_0418 at 410.648 kb on + strand, within Dshi_0418 at 410.649 kb on + strand, within Dshi_0418 at 410.708 kb on - strand, within Dshi_0418 at 410.776 kb on + strand, within Dshi_0418 at 410.791 kb on - strand, within Dshi_0418 at 410.827 kb on + strand, within Dshi_0418 at 410.835 kb on - strand, within Dshi_0418 at 410.879 kb on + strand, within Dshi_0418 at 411.024 kb on - strand, within Dshi_0418 at 411.106 kb on + strand at 411.130 kb on + strand at 411.189 kb on + strand at 411.189 kb on + strand at 411.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 409,015 + -0.2 409,025 - -1.2 409,073 - Dshi_0415 0.22 -0.6 409,074 - Dshi_0415 0.22 +1.0 409,107 - Dshi_0415 0.36 -0.7 409,135 + Dshi_0415 0.47 -1.4 409,143 - Dshi_0415 0.51 -1.3 409,155 + Dshi_0415 0.56 -2.6 409,210 + Dshi_0415 0.78 +2.3 409,218 - Dshi_0415 0.81 +0.6 409,220 + Dshi_0415 0.82 -1.6 409,228 - Dshi_0415 0.86 +0.6 409,232 + +1.6 409,232 + Dshi_0415 0.87 -1.0 409,235 - Dshi_0415 0.88 -1.1 409,240 - +0.2 409,242 + -0.5 409,249 - +1.3 409,264 - +1.6 409,264 - -2.0 409,277 - -1.5 409,291 - -0.9 409,291 - +0.2 409,291 - -1.8 409,298 - -0.2 409,298 - -0.9 409,298 - +0.8 409,326 + -1.8 409,350 + +3.1 409,396 + -0.7 409,399 + -0.7 409,407 + -0.0 409,429 + -0.2 409,429 + +0.7 409,429 + -1.9 409,437 - -0.1 409,448 - -0.1 409,448 - -0.2 409,449 + -1.5 409,511 + -1.6 409,531 - +0.3 409,566 + +1.9 409,572 - -1.1 409,587 - -0.2 409,587 - +0.3 409,597 - -1.1 409,600 - +1.0 409,624 - +0.8 409,676 - Dshi_0416 0.22 -1.0 409,680 + Dshi_0416 0.23 -1.8 409,688 - Dshi_0416 0.26 -0.7 409,688 - Dshi_0416 0.26 -1.1 409,901 - +0.1 409,928 - -0.6 409,973 + +1.6 409,991 - +0.6 409,996 - +1.8 410,006 - -0.6 410,042 + Dshi_0417 0.19 -0.3 410,044 - Dshi_0417 0.20 -0.0 410,055 - Dshi_0417 0.25 -0.9 410,067 - Dshi_0417 0.31 -2.2 410,103 - Dshi_0417 0.48 -0.0 410,109 - Dshi_0417 0.51 +1.6 410,169 - Dshi_0417 0.80 -0.2 410,326 - +0.3 410,328 + -0.9 410,336 - +0.3 410,461 + Dshi_0418 0.20 -1.6 410,501 + Dshi_0418 0.24 -1.0 410,509 - Dshi_0418 0.25 -1.3 410,551 - Dshi_0418 0.30 -1.6 410,648 + Dshi_0418 0.41 -1.0 410,649 + Dshi_0418 0.41 -0.0 410,708 - Dshi_0418 0.47 -0.3 410,776 + Dshi_0418 0.55 -1.0 410,791 - Dshi_0418 0.57 -0.2 410,827 + Dshi_0418 0.61 +3.4 410,835 - Dshi_0418 0.62 -0.5 410,879 + Dshi_0418 0.67 -1.0 411,024 - Dshi_0418 0.83 +0.3 411,106 + -0.2 411,130 + -1.6 411,189 + -0.7 411,189 + -1.0 411,197 + -1.0
Or see this region's nucleotide sequence