Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0359 and Dshi_0360 are separated by 53 nucleotides Dshi_0360 and Dshi_0361 are separated by 83 nucleotides Dshi_0361 and Dshi_0362 overlap by 4 nucleotides
Dshi_0359: Dshi_0359 - lipoprotein signal peptidase (RefSeq), at 342,204 to 342,680
_0359
Dshi_0360: Dshi_0360 - hypothetical protein (RefSeq), at 342,734 to 343,279
_0360
Dshi_0361: Dshi_0361 - peptidase M16 domain protein (RefSeq), at 343,363 to 344,724
_0361
Dshi_0362: Dshi_0362 - peptidase M16 domain protein (RefSeq), at 344,721 to 346,034
_0362
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 342.427 kb on + strand, within Dshi_0359 at 342.448 kb on - strand, within Dshi_0359 at 342.571 kb on + strand, within Dshi_0359 at 342.630 kb on + strand, within Dshi_0359 at 342.645 kb on - strand at 342.843 kb on + strand, within Dshi_0360 at 342.932 kb on - strand, within Dshi_0360 at 343.039 kb on - strand, within Dshi_0360 at 343.045 kb on + strand, within Dshi_0360 at 343.264 kb on + strand at 343.307 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.434 kb on - strand at 343.454 kb on + strand at 343.577 kb on - strand, within Dshi_0361 at 343.602 kb on + strand, within Dshi_0361 at 343.656 kb on - strand, within Dshi_0361 at 343.929 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.099 kb on - strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.228 kb on - strand, within Dshi_0361 at 344.273 kb on - strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.328 kb on - strand, within Dshi_0361 at 344.366 kb on - strand, within Dshi_0361 at 344.519 kb on - strand, within Dshi_0361 at 344.526 kb on - strand, within Dshi_0361 at 344.565 kb on + strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.582 kb on + strand, within Dshi_0361 at 344.595 kb on + strand at 344.595 kb on + strand at 344.600 kb on + strand at 344.733 kb on - strand at 344.779 kb on - strand at 344.837 kb on + strand at 344.872 kb on + strand, within Dshi_0362 at 345.236 kb on + strand, within Dshi_0362 at 345.382 kb on - strand, within Dshi_0362 at 345.440 kb on + strand, within Dshi_0362 at 345.463 kb on + strand, within Dshi_0362 at 345.634 kb on + strand, within Dshi_0362
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 342,427 + Dshi_0359 0.47 -0.7 342,448 - Dshi_0359 0.51 -0.2 342,571 + Dshi_0359 0.77 -1.7 342,630 + Dshi_0359 0.89 -2.3 342,645 - -0.7 342,843 + Dshi_0360 0.20 +1.3 342,932 - Dshi_0360 0.36 -1.3 343,039 - Dshi_0360 0.56 -0.1 343,045 + Dshi_0360 0.57 -1.1 343,264 + -1.8 343,307 + -0.0 343,333 + -1.1 343,333 + +2.8 343,333 + -2.5 343,434 - -1.7 343,454 + -1.9 343,577 - Dshi_0361 0.16 +0.3 343,602 + Dshi_0361 0.18 +1.3 343,656 - Dshi_0361 0.22 +0.5 343,929 + Dshi_0361 0.42 -1.2 344,081 + Dshi_0361 0.53 -1.3 344,081 + Dshi_0361 0.53 -0.3 344,089 - Dshi_0361 0.53 +2.4 344,089 - Dshi_0361 0.53 +2.1 344,099 - Dshi_0361 0.54 +1.8 344,169 + Dshi_0361 0.59 -0.7 344,169 + Dshi_0361 0.59 -0.9 344,228 - Dshi_0361 0.64 -0.8 344,273 - Dshi_0361 0.67 -1.5 344,320 + Dshi_0361 0.70 +1.8 344,320 + Dshi_0361 0.70 -1.3 344,328 - Dshi_0361 0.71 -0.1 344,366 - Dshi_0361 0.74 +0.3 344,519 - Dshi_0361 0.85 -2.4 344,526 - Dshi_0361 0.85 +0.3 344,565 + Dshi_0361 0.88 -0.1 344,575 - Dshi_0361 0.89 +1.6 344,575 - Dshi_0361 0.89 -0.7 344,575 - Dshi_0361 0.89 +1.4 344,582 + Dshi_0361 0.90 -1.0 344,595 + +0.5 344,595 + -1.2 344,600 + -0.1 344,733 - -0.7 344,779 - -1.2 344,837 + -1.4 344,872 + Dshi_0362 0.11 -2.7 345,236 + Dshi_0362 0.39 -1.1 345,382 - Dshi_0362 0.50 -1.0 345,440 + Dshi_0362 0.55 +1.8 345,463 + Dshi_0362 0.56 +0.5 345,634 + Dshi_0362 0.69 -0.7
Or see this region's nucleotide sequence