Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0264 and Dshi_0265 are separated by 294 nucleotides Dshi_0265 and Dshi_0266 are separated by 72 nucleotides Dshi_0266 and Dshi_0267 are separated by 136 nucleotides
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Dshi_0265: Dshi_0265 - ribosomal protein L10 (RefSeq), at 261,837 to 262,355
_0265
Dshi_0266: Dshi_0266 - ribosomal protein L7/L12 (RefSeq), at 262,428 to 262,808
_0266
Dshi_0267: Dshi_0267 - hypothetical protein (RefSeq), at 262,945 to 264,294
_0267
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 260.913 kb on + strand, within Dshi_0264 at 261.072 kb on + strand, within Dshi_0264 at 261.091 kb on - strand, within Dshi_0264 at 261.287 kb on + strand, within Dshi_0264 at 261.300 kb on + strand, within Dshi_0264 at 261.374 kb on - strand, within Dshi_0264 at 261.376 kb on + strand, within Dshi_0264 at 261.386 kb on + strand, within Dshi_0264 at 261.394 kb on - strand, within Dshi_0264 at 261.507 kb on - strand at 261.507 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 262.879 kb on + strand at 262.902 kb on + strand at 262.902 kb on + strand at 262.966 kb on - strand at 262.968 kb on + strand at 263.002 kb on + strand at 263.018 kb on - strand at 263.021 kb on + strand at 263.033 kb on + strand at 263.072 kb on + strand at 263.128 kb on + strand, within Dshi_0267 at 263.128 kb on + strand, within Dshi_0267 at 263.136 kb on - strand, within Dshi_0267 at 263.181 kb on + strand, within Dshi_0267 at 263.230 kb on - strand, within Dshi_0267 at 263.232 kb on + strand, within Dshi_0267 at 263.265 kb on + strand, within Dshi_0267 at 263.349 kb on - strand, within Dshi_0267
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 260,913 + Dshi_0264 0.41 +1.4 261,072 + Dshi_0264 0.56 +0.6 261,091 - Dshi_0264 0.57 +0.6 261,287 + Dshi_0264 0.76 +0.5 261,300 + Dshi_0264 0.77 -1.9 261,374 - Dshi_0264 0.84 +0.8 261,376 + Dshi_0264 0.84 +0.6 261,386 + Dshi_0264 0.85 +1.1 261,394 - Dshi_0264 0.86 +1.0 261,507 - +0.4 261,507 - +1.4 261,568 - +0.1 261,568 - +1.3 261,568 - +3.4 262,879 + +0.6 262,902 + -0.1 262,902 + +0.5 262,966 - -0.1 262,968 + +0.2 263,002 + +0.2 263,018 - -0.2 263,021 + +0.8 263,033 + +0.3 263,072 + +0.1 263,128 + Dshi_0267 0.14 -1.0 263,128 + Dshi_0267 0.14 +3.6 263,136 - Dshi_0267 0.14 -1.4 263,181 + Dshi_0267 0.17 +0.7 263,230 - Dshi_0267 0.21 +0.5 263,232 + Dshi_0267 0.21 +1.3 263,265 + Dshi_0267 0.24 -0.9 263,349 - Dshi_0267 0.30 -0.8
Or see this region's nucleotide sequence