Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0262 and Dshi_0263 are separated by 127 nucleotides Dshi_0263 and Dshi_0264 are separated by 54 nucleotides Dshi_0264 and Dshi_0265 are separated by 294 nucleotides Dshi_0265 and Dshi_0266 are separated by 72 nucleotides
Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516
_0262
Dshi_0263: Dshi_0263 - methyltransferase FkbM family (RefSeq), at 259,644 to 260,429
_0263
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Dshi_0265: Dshi_0265 - ribosomal protein L10 (RefSeq), at 261,837 to 262,355
_0265
Dshi_0266: Dshi_0266 - ribosomal protein L7/L12 (RefSeq), at 262,428 to 262,808
_0266
Position (kb)
260
261
262 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 259.667 kb on + strand at 259.675 kb on - strand at 259.687 kb on + strand at 259.756 kb on - strand, within Dshi_0263 at 259.760 kb on + strand, within Dshi_0263 at 259.860 kb on - strand, within Dshi_0263 at 259.975 kb on + strand, within Dshi_0263 at 259.983 kb on - strand, within Dshi_0263 at 260.051 kb on + strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.065 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.094 kb on - strand, within Dshi_0263 at 260.181 kb on + strand, within Dshi_0263 at 260.234 kb on + strand, within Dshi_0263 at 260.278 kb on + strand, within Dshi_0263 at 260.280 kb on - strand, within Dshi_0263 at 260.306 kb on + strand, within Dshi_0263 at 260.329 kb on - strand, within Dshi_0263 at 260.350 kb on + strand, within Dshi_0263 at 260.356 kb on - strand at 260.394 kb on + strand at 260.404 kb on - strand at 260.460 kb on - strand at 260.468 kb on + strand at 260.468 kb on + strand at 260.476 kb on - strand at 260.476 kb on - strand at 260.560 kb on + strand at 260.597 kb on + strand, within Dshi_0264 at 260.667 kb on - strand, within Dshi_0264 at 260.717 kb on + strand, within Dshi_0264 at 260.725 kb on - strand, within Dshi_0264 at 260.735 kb on - strand, within Dshi_0264 at 260.744 kb on + strand, within Dshi_0264 at 260.831 kb on - strand, within Dshi_0264 at 260.913 kb on + strand, within Dshi_0264 at 261.072 kb on + strand, within Dshi_0264 at 261.091 kb on - strand, within Dshi_0264 at 261.287 kb on + strand, within Dshi_0264 at 261.300 kb on + strand, within Dshi_0264 at 261.374 kb on - strand, within Dshi_0264 at 261.376 kb on + strand, within Dshi_0264 at 261.386 kb on + strand, within Dshi_0264 at 261.394 kb on - strand, within Dshi_0264 at 261.507 kb on - strand at 261.507 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 259,667 + +1.3 259,675 - +1.7 259,687 + +0.4 259,756 - Dshi_0263 0.14 -0.7 259,760 + Dshi_0263 0.15 -0.3 259,860 - Dshi_0263 0.27 +0.4 259,975 + Dshi_0263 0.42 +2.7 259,983 - Dshi_0263 0.43 -1.5 260,051 + Dshi_0263 0.52 +1.4 260,059 - Dshi_0263 0.53 +0.1 260,059 - Dshi_0263 0.53 -1.7 260,065 + Dshi_0263 0.54 +0.5 260,086 + Dshi_0263 0.56 -0.2 260,086 + Dshi_0263 0.56 -1.8 260,086 + Dshi_0263 0.56 -2.8 260,094 - Dshi_0263 0.57 +0.4 260,181 + Dshi_0263 0.68 +0.0 260,234 + Dshi_0263 0.75 -0.8 260,278 + Dshi_0263 0.81 +0.7 260,280 - Dshi_0263 0.81 -2.0 260,306 + Dshi_0263 0.84 -0.1 260,329 - Dshi_0263 0.87 +0.2 260,350 + Dshi_0263 0.90 +1.0 260,356 - +0.3 260,394 + +2.0 260,404 - -0.0 260,460 - -0.2 260,468 + -0.7 260,468 + +2.0 260,476 - +0.4 260,476 - +0.7 260,560 + +0.4 260,597 + Dshi_0264 0.11 +1.4 260,667 - Dshi_0264 0.17 +0.5 260,717 + Dshi_0264 0.22 +2.4 260,725 - Dshi_0264 0.23 +1.0 260,735 - Dshi_0264 0.24 +1.0 260,744 + Dshi_0264 0.25 +2.4 260,831 - Dshi_0264 0.33 -0.3 260,913 + Dshi_0264 0.41 +1.4 261,072 + Dshi_0264 0.56 +0.6 261,091 - Dshi_0264 0.57 +0.6 261,287 + Dshi_0264 0.76 +0.5 261,300 + Dshi_0264 0.77 -1.9 261,374 - Dshi_0264 0.84 +0.8 261,376 + Dshi_0264 0.84 +0.6 261,386 + Dshi_0264 0.85 +1.1 261,394 - Dshi_0264 0.86 +1.0 261,507 - +0.4 261,507 - +1.4 261,568 - +0.1 261,568 - +1.3 261,568 - +3.4
Or see this region's nucleotide sequence