Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0230 and Dshi_0231 are separated by 12 nucleotides Dshi_0231 and Dshi_0232 are separated by 257 nucleotides Dshi_0232 and Dshi_0233 are separated by 155 nucleotides
Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767
_0230
Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145
_0231
Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473
_0232
Dshi_0233: Dshi_0233 - Citrate transporter (RefSeq), at 229,629 to 231,512
_0233
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 227.467 kb on - strand at 228.121 kb on + strand at 228.124 kb on - strand at 228.129 kb on - strand at 228.129 kb on - strand at 228.177 kb on + strand at 228.177 kb on + strand at 228.185 kb on - strand at 228.209 kb on - strand at 228.229 kb on - strand at 228.241 kb on - strand at 228.251 kb on + strand at 228.286 kb on + strand at 228.294 kb on - strand at 228.294 kb on - strand at 228.298 kb on + strand at 228.369 kb on + strand at 228.376 kb on - strand at 228.377 kb on - strand at 228.378 kb on + strand at 228.386 kb on - strand at 228.391 kb on - strand at 228.400 kb on + strand at 228.400 kb on + strand at 228.408 kb on - strand at 228.431 kb on - strand at 228.436 kb on - strand at 228.444 kb on - strand at 228.457 kb on - strand at 228.458 kb on + strand at 228.466 kb on - strand at 228.479 kb on + strand at 228.522 kb on + strand, within Dshi_0232 at 228.528 kb on + strand, within Dshi_0232 at 228.540 kb on + strand, within Dshi_0232 at 228.574 kb on - strand, within Dshi_0232 at 228.610 kb on - strand, within Dshi_0232 at 228.686 kb on + strand, within Dshi_0232 at 228.710 kb on + strand, within Dshi_0232 at 228.726 kb on - strand, within Dshi_0232 at 228.735 kb on + strand, within Dshi_0232 at 228.869 kb on + strand, within Dshi_0232 at 228.919 kb on - strand, within Dshi_0232 at 228.938 kb on - strand, within Dshi_0232 at 228.992 kb on - strand, within Dshi_0232 at 229.025 kb on - strand, within Dshi_0232 at 229.063 kb on + strand, within Dshi_0232 at 229.197 kb on - strand, within Dshi_0232 at 229.277 kb on - strand, within Dshi_0232 at 229.307 kb on + strand, within Dshi_0232 at 229.523 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.634 kb on - strand at 229.777 kb on - strand at 229.798 kb on - strand at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.884 kb on + strand, within Dshi_0233 at 230.015 kb on + strand, within Dshi_0233 at 230.079 kb on + strand, within Dshi_0233 at 230.136 kb on - strand, within Dshi_0233 at 230.258 kb on + strand, within Dshi_0233 at 230.291 kb on + strand, within Dshi_0233 at 230.292 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 227,467 - -1.6 228,121 + +0.4 228,124 - -1.1 228,129 - +1.4 228,129 - -0.1 228,177 + -0.8 228,177 + +0.4 228,185 - -0.5 228,209 - +0.3 228,229 - +0.1 228,241 - -1.3 228,251 + -1.6 228,286 + +0.8 228,294 - -0.4 228,294 - -1.2 228,298 + +1.4 228,369 + +1.9 228,376 - -0.5 228,377 - -1.3 228,378 + +1.4 228,386 - +2.2 228,391 - +0.4 228,400 + +0.5 228,400 + -1.5 228,408 - -0.5 228,431 - +0.4 228,436 - -1.2 228,444 - -0.4 228,457 - -1.5 228,458 + +1.4 228,466 - -2.2 228,479 + -0.1 228,522 + Dshi_0232 0.11 +0.4 228,528 + Dshi_0232 0.12 +0.4 228,540 + Dshi_0232 0.13 -0.9 228,574 - Dshi_0232 0.16 -0.5 228,610 - Dshi_0232 0.19 -0.6 228,686 + Dshi_0232 0.26 -1.6 228,710 + Dshi_0232 0.29 -1.7 228,726 - Dshi_0232 0.30 -1.6 228,735 + Dshi_0232 0.31 +3.4 228,869 + Dshi_0232 0.44 -0.6 228,919 - Dshi_0232 0.48 +1.1 228,938 - Dshi_0232 0.50 -0.5 228,992 - Dshi_0232 0.55 +2.4 229,025 - Dshi_0232 0.58 -0.2 229,063 + Dshi_0232 0.62 +0.3 229,197 - Dshi_0232 0.74 -0.3 229,277 - Dshi_0232 0.82 +1.9 229,307 + Dshi_0232 0.84 -0.4 229,523 + +0.4 229,615 + -2.3 229,615 + +0.1 229,615 + +0.9 229,623 - -0.1 229,623 - +0.4 229,623 - +1.9 229,634 - -1.6 229,777 - -0.1 229,798 - -2.5 229,822 + Dshi_0233 0.10 +0.0 229,822 + Dshi_0233 0.10 +0.2 229,822 + Dshi_0233 0.10 -1.2 229,884 + Dshi_0233 0.14 +2.4 230,015 + Dshi_0233 0.20 -2.0 230,079 + Dshi_0233 0.24 -0.2 230,136 - Dshi_0233 0.27 -2.0 230,258 + Dshi_0233 0.33 -3.6 230,291 + Dshi_0233 0.35 +1.4 230,292 - Dshi_0233 0.35 -1.5 230,428 - Dshi_0233 0.42 +0.4 230,428 - Dshi_0233 0.42 +0.1 230,428 - Dshi_0233 0.42 +0.1
Or see this region's nucleotide sequence