Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0199

Experiment: m.b. A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0197 and Dshi_0198 are separated by 139 nucleotidesDshi_0198 and Dshi_0199 are separated by 55 nucleotidesDshi_0199 and Dshi_0200 overlap by 4 nucleotidesDshi_0200 and Dshi_0201 overlap by 8 nucleotides Dshi_0197: Dshi_0197 - hypothetical protein (RefSeq), at 197,042 to 197,704 _0197 Dshi_0198: Dshi_0198 - holo-acyl-carrier-protein synthase (RefSeq), at 197,844 to 198,263 _0198 Dshi_0199: Dshi_0199 - signal peptidase I (RefSeq), at 198,319 to 199,104 _0199 Dshi_0200: Dshi_0200 - Ribonuclease III (RefSeq), at 199,101 to 199,790 _0200 Dshi_0201: Dshi_0201 - GTP-binding protein Era (RefSeq), at 199,783 to 200,709 _0201 Position (kb) 198 199 200Strain fitness (log2 ratio) -1 0 1 2at 197.578 kb on - strand, within Dshi_0197at 197.578 kb on - strand, within Dshi_0197at 197.588 kb on + strand, within Dshi_0197at 197.595 kb on + strand, within Dshi_0197at 197.694 kb on - strandat 197.716 kb on + strandat 197.821 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
remove
197,578 - Dshi_0197 0.81 +0.4
197,578 - Dshi_0197 0.81 -1.6
197,588 + Dshi_0197 0.82 -0.6
197,595 + Dshi_0197 0.83 -0.4
197,694 - +0.4
197,716 + +2.7
197,821 - -1.5

Or see this region's nucleotide sequence