Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0156

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0155 and Dshi_0156 overlap by 8 nucleotidesDshi_0156 and Dshi_0157 are separated by 11 nucleotidesDshi_0157 and Dshi_0158 are separated by 243 nucleotides Dshi_0155: Dshi_0155 - LrgA family protein (RefSeq), at 155,531 to 155,887 _0155 Dshi_0156: Dshi_0156 - LrgB family protein (RefSeq), at 155,880 to 156,596 _0156 Dshi_0157: Dshi_0157 - cob(I)alamin adenosyltransferase (RefSeq), at 156,608 to 157,222 _0157 Dshi_0158: Dshi_0158 - cobaltochelatase, CobN subunit (RefSeq), at 157,466 to 161,173 _0158 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 154.953 kb on - strandat 155.014 kb on + strandat 155.032 kb on - strandat 155.065 kb on + strandat 155.073 kb on - strandat 155.073 kb on - strandat 155.252 kb on - strandat 155.304 kb on - strandat 155.352 kb on - strandat 155.371 kb on - strandat 155.483 kb on + strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.520 kb on + strandat 155.600 kb on - strand, within Dshi_0155at 155.638 kb on + strand, within Dshi_0155at 155.826 kb on + strandat 155.881 kb on + strandat 155.974 kb on + strand, within Dshi_0156at 155.997 kb on + strand, within Dshi_0156at 156.167 kb on - strand, within Dshi_0156at 156.329 kb on + strand, within Dshi_0156at 156.413 kb on - strand, within Dshi_0156at 156.473 kb on + strand, within Dshi_0156at 156.549 kb on + strandat 156.561 kb on + strandat 157.245 kb on + strandat 157.282 kb on + strandat 157.386 kb on + strandat 157.417 kb on + strandat 157.476 kb on + strandat 157.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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154,953 - -2.2
155,014 + +2.0
155,032 - +1.4
155,065 + -2.7
155,073 - +2.8
155,073 - +2.0
155,252 - +2.0
155,304 - -0.6
155,352 - -0.9
155,371 - +0.1
155,483 + +0.4
155,491 - -0.9
155,491 - -1.9
155,491 - -2.3
155,491 - -0.8
155,520 + -0.6
155,600 - Dshi_0155 0.19 -1.2
155,638 + Dshi_0155 0.30 -1.9
155,826 + +1.4
155,881 + +0.4
155,974 + Dshi_0156 0.13 -1.5
155,997 + Dshi_0156 0.16 -1.6
156,167 - Dshi_0156 0.40 -1.2
156,329 + Dshi_0156 0.63 -0.8
156,413 - Dshi_0156 0.74 +0.4
156,473 + Dshi_0156 0.83 -2.4
156,549 + +4.0
156,561 + +2.4
157,245 + -0.7
157,282 + -0.3
157,386 + -0.2
157,417 + +2.4
157,476 + -0.7
157,496 - +0.4

Or see this region's nucleotide sequence