Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0155 and Dshi_0156 overlap by 8 nucleotides Dshi_0156 and Dshi_0157 are separated by 11 nucleotides Dshi_0157 and Dshi_0158 are separated by 243 nucleotides
Dshi_0155: Dshi_0155 - LrgA family protein (RefSeq), at 155,531 to 155,887
_0155
Dshi_0156: Dshi_0156 - LrgB family protein (RefSeq), at 155,880 to 156,596
_0156
Dshi_0157: Dshi_0157 - cob(I)alamin adenosyltransferase (RefSeq), at 156,608 to 157,222
_0157
Dshi_0158: Dshi_0158 - cobaltochelatase, CobN subunit (RefSeq), at 157,466 to 161,173
_0158
Position (kb)
155
156
157 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 154.953 kb on - strand at 155.014 kb on + strand at 155.032 kb on - strand at 155.065 kb on + strand at 155.073 kb on - strand at 155.073 kb on - strand at 155.252 kb on - strand at 155.304 kb on - strand at 155.352 kb on - strand at 155.371 kb on - strand at 155.483 kb on + strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.520 kb on + strand at 155.600 kb on - strand, within Dshi_0155 at 155.638 kb on + strand, within Dshi_0155 at 155.826 kb on + strand at 155.881 kb on + strand at 155.974 kb on + strand, within Dshi_0156 at 155.997 kb on + strand, within Dshi_0156 at 156.167 kb on - strand, within Dshi_0156 at 156.329 kb on + strand, within Dshi_0156 at 156.413 kb on - strand, within Dshi_0156 at 156.473 kb on + strand, within Dshi_0156 at 156.549 kb on + strand at 156.561 kb on + strand at 157.245 kb on + strand at 157.282 kb on + strand at 157.386 kb on + strand at 157.417 kb on + strand at 157.476 kb on + strand at 157.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 154,953 - -2.2 155,014 + +2.0 155,032 - +1.4 155,065 + -2.7 155,073 - +2.8 155,073 - +2.0 155,252 - +2.0 155,304 - -0.6 155,352 - -0.9 155,371 - +0.1 155,483 + +0.4 155,491 - -0.9 155,491 - -1.9 155,491 - -2.3 155,491 - -0.8 155,520 + -0.6 155,600 - Dshi_0155 0.19 -1.2 155,638 + Dshi_0155 0.30 -1.9 155,826 + +1.4 155,881 + +0.4 155,974 + Dshi_0156 0.13 -1.5 155,997 + Dshi_0156 0.16 -1.6 156,167 - Dshi_0156 0.40 -1.2 156,329 + Dshi_0156 0.63 -0.8 156,413 - Dshi_0156 0.74 +0.4 156,473 + Dshi_0156 0.83 -2.4 156,549 + +4.0 156,561 + +2.4 157,245 + -0.7 157,282 + -0.3 157,386 + -0.2 157,417 + +2.4 157,476 + -0.7 157,496 - +0.4
Or see this region's nucleotide sequence