Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0146 and Dshi_0147 are separated by 285 nucleotides Dshi_0147 and Dshi_0148 are separated by 30 nucleotides Dshi_0148 and Dshi_0149 overlap by 4 nucleotides
Dshi_0146: Dshi_0146 - Rhodanese domain protein (RefSeq), at 146,231 to 147,106
_0146
Dshi_0147: Dshi_0147 - SsrA-binding protein (RefSeq), at 147,392 to 147,874
_0147
Dshi_0148: Dshi_0148 - GCN5-related N-acetyltransferase (RefSeq), at 147,905 to 148,354
_0148
Dshi_0149: Dshi_0149 - dihydrodipicolinate synthase (RefSeq), at 148,351 to 149,226
_0149
Position (kb) 147
148 Strain fitness (log2 ratio) -1
0
1
2
3 at 146.509 kb on - strand, within Dshi_0146 at 146.531 kb on - strand, within Dshi_0146 at 146.600 kb on - strand, within Dshi_0146 at 146.625 kb on + strand, within Dshi_0146 at 146.725 kb on - strand, within Dshi_0146 at 146.783 kb on - strand, within Dshi_0146 at 147.023 kb on + strand at 147.398 kb on - strand at 147.904 kb on - strand at 147.995 kb on + strand, within Dshi_0148 at 148.081 kb on + strand, within Dshi_0148 at 148.155 kb on - strand, within Dshi_0148 at 148.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 146,509 - Dshi_0146 0.32 +1.7 146,531 - Dshi_0146 0.34 +0.3 146,600 - Dshi_0146 0.42 +0.0 146,625 + Dshi_0146 0.45 +0.0 146,725 - Dshi_0146 0.56 +2.8 146,783 - Dshi_0146 0.63 +1.7 147,023 + +2.0 147,398 - +0.2 147,904 - +0.7 147,995 + Dshi_0148 0.20 -1.4 148,081 + Dshi_0148 0.39 -0.7 148,155 - Dshi_0148 0.56 -0.1 148,334 + -0.2
Or see this region's nucleotide sequence