Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0145
Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
144,199 | - | Dshi_0144 | 0.48 | -1.2 | |
144,224 | - | Dshi_0144 | 0.50 | +0.4 | |
144,240 | - | Dshi_0144 | 0.51 | +1.5 | |
144,264 | + | Dshi_0144 | 0.53 | -0.8 | |
144,304 | - | Dshi_0144 | 0.56 | +3.0 | |
144,456 | - | Dshi_0144 | 0.67 | -0.4 | |
144,472 | - | Dshi_0144 | 0.69 | -2.1 | |
144,513 | + | Dshi_0144 | 0.72 | +1.7 | |
144,570 | + | Dshi_0144 | 0.76 | -1.0 | |
144,630 | + | Dshi_0144 | 0.81 | +0.6 | |
144,677 | - | Dshi_0144 | 0.84 | +1.8 | |
144,711 | - | Dshi_0144 | 0.87 | -0.7 | |
144,761 | - | +1.4 | |||
144,761 | - | -0.6 | |||
144,869 | - | -0.6 | |||
144,885 | - | -1.0 | |||
144,949 | - | +1.2 | |||
144,949 | - | +1.8 | |||
144,956 | + | -0.2 | |||
144,964 | + | +1.2 | |||
144,988 | - | -0.7 | |||
145,037 | + | +2.8 | |||
145,258 | + | Dshi_0145 | 0.18 | +0.0 | |
145,260 | - | Dshi_0145 | 0.18 | +1.3 | |
145,316 | + | Dshi_0145 | 0.23 | +2.1 | |
145,364 | + | +2.4 | |||
145,412 | - | Dshi_0145 | 0.31 | -0.8 | |
145,522 | + | Dshi_0145 | 0.41 | +0.9 | |
145,726 | + | Dshi_0145 | 0.58 | -2.2 | |
146,384 | - | Dshi_0146 | 0.17 | +1.8 | |
146,509 | - | Dshi_0146 | 0.32 | +1.7 | |
146,531 | - | Dshi_0146 | 0.34 | +0.3 | |
146,600 | - | Dshi_0146 | 0.42 | +0.0 | |
146,625 | + | Dshi_0146 | 0.45 | +0.0 | |
146,725 | - | Dshi_0146 | 0.56 | +2.8 | |
146,783 | - | Dshi_0146 | 0.63 | +1.7 | |
147,023 | + | +2.0 |
Or see this region's nucleotide sequence