Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0104 and Dshi_0105 are separated by 11 nucleotides Dshi_0105 and Dshi_0106 overlap by 4 nucleotides Dshi_0106 and Dshi_0107 are separated by 119 nucleotides
Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527
_0104
Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249
_0105
Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869
_0106
Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960
_0107
Position (kb) 105
106 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 104.272 kb on - strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.310 kb on + strand, within Dshi_0104 at 104.388 kb on + strand, within Dshi_0104 at 104.489 kb on - strand at 104.647 kb on + strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.694 kb on - strand, within Dshi_0105 at 104.731 kb on + strand, within Dshi_0105 at 104.830 kb on + strand, within Dshi_0105 at 104.867 kb on + strand, within Dshi_0105 at 104.960 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.114 kb on + strand, within Dshi_0105 at 105.152 kb on + strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.197 kb on - strand at 105.256 kb on - strand at 105.256 kb on - strand at 105.348 kb on - strand, within Dshi_0106 at 105.350 kb on - strand, within Dshi_0106 at 105.357 kb on + strand, within Dshi_0106 at 105.360 kb on - strand, within Dshi_0106 at 105.380 kb on - strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.507 kb on - strand, within Dshi_0106 at 105.546 kb on + strand, within Dshi_0106 at 105.670 kb on + strand, within Dshi_0106 at 105.787 kb on - strand, within Dshi_0106 at 105.879 kb on + strand at 105.884 kb on + strand at 105.889 kb on + strand at 105.927 kb on - strand at 106.083 kb on - strand at 106.220 kb on + strand, within Dshi_0107 at 106.374 kb on + strand, within Dshi_0107 at 106.401 kb on + strand, within Dshi_0107 at 106.475 kb on - strand, within Dshi_0107 at 106.498 kb on + strand, within Dshi_0107 at 106.508 kb on + strand, within Dshi_0107 at 106.523 kb on - strand, within Dshi_0107 at 106.533 kb on - strand, within Dshi_0107 at 106.564 kb on - strand, within Dshi_0107 at 106.656 kb on + strand, within Dshi_0107 at 106.666 kb on + strand, within Dshi_0107 at 106.758 kb on + strand, within Dshi_0107 at 106.758 kb on + strand, within Dshi_0107 at 106.763 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.782 kb on - strand, within Dshi_0107
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 104,272 - Dshi_0104 0.48 +0.9 104,308 + Dshi_0104 0.55 +0.3 104,308 + Dshi_0104 0.55 +1.7 104,308 + Dshi_0104 0.55 -0.6 104,310 + Dshi_0104 0.55 -0.4 104,388 + Dshi_0104 0.71 -1.4 104,489 - +1.3 104,647 + Dshi_0105 0.15 +0.4 104,666 - Dshi_0105 0.18 +4.2 104,666 - Dshi_0105 0.18 -0.9 104,694 - Dshi_0105 0.22 -0.2 104,731 + Dshi_0105 0.27 -0.6 104,830 + Dshi_0105 0.41 -0.0 104,867 + Dshi_0105 0.46 +0.4 104,960 - Dshi_0105 0.59 +1.3 105,007 - Dshi_0105 0.66 +1.0 105,007 - Dshi_0105 0.66 +0.4 105,007 - Dshi_0105 0.66 -1.2 105,114 + Dshi_0105 0.81 +0.0 105,152 + Dshi_0105 0.86 -1.1 105,160 - Dshi_0105 0.87 +0.4 105,160 - Dshi_0105 0.87 -0.1 105,197 - +0.4 105,256 - +2.0 105,256 - +3.0 105,348 - Dshi_0106 0.16 +0.1 105,350 - Dshi_0106 0.17 +0.4 105,357 + Dshi_0106 0.18 +0.6 105,360 - Dshi_0106 0.18 +0.7 105,380 - Dshi_0106 0.21 -0.9 105,432 + Dshi_0106 0.30 -1.0 105,432 + Dshi_0106 0.30 -2.5 105,507 - Dshi_0106 0.42 -0.3 105,546 + Dshi_0106 0.48 +1.8 105,670 + Dshi_0106 0.68 -0.7 105,787 - Dshi_0106 0.87 +2.3 105,879 + -0.1 105,884 + -0.2 105,889 + +0.3 105,927 - +0.7 106,083 - -0.0 106,220 + Dshi_0107 0.24 +0.1 106,374 + Dshi_0107 0.40 +1.3 106,401 + Dshi_0107 0.42 -0.3 106,475 - Dshi_0107 0.50 -2.2 106,498 + Dshi_0107 0.52 -0.6 106,508 + Dshi_0107 0.53 +2.6 106,523 - Dshi_0107 0.55 -0.6 106,533 - Dshi_0107 0.56 +0.6 106,564 - Dshi_0107 0.59 +0.8 106,656 + Dshi_0107 0.69 +1.8 106,666 + Dshi_0107 0.70 +0.4 106,758 + Dshi_0107 0.79 +0.1 106,758 + Dshi_0107 0.79 -0.2 106,763 + Dshi_0107 0.80 -1.9 106,774 + Dshi_0107 0.81 -1.0 106,774 + Dshi_0107 0.81 +0.5 106,774 + Dshi_0107 0.81 +0.1 106,782 - Dshi_0107 0.82 +0.5
Or see this region's nucleotide sequence