Experiment: m.b. A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0062 and Dshi_0063 are separated by 122 nucleotides Dshi_0063 and Dshi_0064 overlap by 14 nucleotides Dshi_0064 and Dshi_0065 are separated by 77 nucleotides
Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650
_0062
Dshi_0063: Dshi_0063 - Inositol-phosphate phosphatase (RefSeq), at 63,773 to 64,567
_0063
Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900
_0064
Dshi_0065: Dshi_0065 - hypothetical protein (RefSeq), at 65,978 to 67,468
_0065
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.616 kb on - strand at 63.645 kb on + strand at 63.645 kb on + strand at 63.653 kb on - strand at 63.698 kb on - strand at 63.711 kb on - strand at 63.857 kb on - strand, within Dshi_0063 at 63.857 kb on - strand, within Dshi_0063 at 63.891 kb on - strand, within Dshi_0063 at 64.002 kb on - strand, within Dshi_0063 at 64.157 kb on + strand, within Dshi_0063 at 64.188 kb on + strand, within Dshi_0063 at 64.259 kb on + strand, within Dshi_0063 at 64.264 kb on + strand, within Dshi_0063 at 64.479 kb on + strand, within Dshi_0063 at 64.569 kb on + strand at 64.606 kb on - strand at 64.613 kb on - strand at 64.641 kb on + strand at 64.855 kb on - strand, within Dshi_0064 at 64.905 kb on - strand, within Dshi_0064 at 65.082 kb on - strand, within Dshi_0064 at 65.240 kb on + strand, within Dshi_0064 at 65.319 kb on + strand, within Dshi_0064 at 65.486 kb on - strand, within Dshi_0064 at 65.696 kb on - strand, within Dshi_0064 at 65.865 kb on - strand at 65.882 kb on - strand at 65.939 kb on - strand at 66.085 kb on - strand at 66.096 kb on + strand at 66.132 kb on + strand, within Dshi_0065 at 66.318 kb on + strand, within Dshi_0065 at 66.475 kb on - strand, within Dshi_0065 at 66.673 kb on - strand, within Dshi_0065 at 66.817 kb on - strand, within Dshi_0065
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml remove 63,616 - -2.3 63,645 + +0.1 63,645 + -0.7 63,653 - +1.2 63,698 - -0.8 63,711 - +0.4 63,857 - Dshi_0063 0.11 -0.6 63,857 - Dshi_0063 0.11 -1.4 63,891 - Dshi_0063 0.15 -0.8 64,002 - Dshi_0063 0.29 +0.4 64,157 + Dshi_0063 0.48 -1.9 64,188 + Dshi_0063 0.52 -0.6 64,259 + Dshi_0063 0.61 -0.8 64,264 + Dshi_0063 0.62 -0.6 64,479 + Dshi_0063 0.89 +2.4 64,569 + -0.2 64,606 - +0.4 64,613 - +2.4 64,641 + +0.6 64,855 - Dshi_0064 0.22 -2.3 64,905 - Dshi_0064 0.26 -0.2 65,082 - Dshi_0064 0.39 -0.0 65,240 + Dshi_0064 0.51 +0.8 65,319 + Dshi_0064 0.57 -0.6 65,486 - Dshi_0064 0.69 +0.3 65,696 - Dshi_0064 0.85 -0.6 65,865 - -0.6 65,882 - +0.4 65,939 - -0.3 66,085 - -1.2 66,096 + -1.2 66,132 + Dshi_0065 0.10 +2.4 66,318 + Dshi_0065 0.23 -0.6 66,475 - Dshi_0065 0.33 -1.9 66,673 - Dshi_0065 0.47 -0.6 66,817 - Dshi_0065 0.56 -1.4
Or see this region's nucleotide sequence