Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0059

Experiment: m.b. A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0057 and Dshi_0058 are separated by 81 nucleotidesDshi_0058 and Dshi_0059 are separated by 40 nucleotidesDshi_0059 and Dshi_0060 are separated by 13 nucleotides Dshi_0057: Dshi_0057 - leucyl-tRNA synthetase (RefSeq), at 53,250 to 55,859 _0057 Dshi_0058: Dshi_0058 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 55,941 to 56,645 _0058 Dshi_0059: Dshi_0059 - cell divisionFtsK/SpoIIIE (RefSeq), at 56,686 to 59,673 _0059 Dshi_0060: Dshi_0060 - aminotransferase class I and II (RefSeq), at 59,687 to 60,868 _0060 Position (kb) 56 57 58 59 60Strain fitness (log2 ratio) -1 0 1at 55.919 kb on + strandat 55.927 kb on - strandat 55.927 kb on - strandat 56.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.01 mg/ml
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55,919 + +0.1
55,927 - +1.1
55,927 - -0.4
56,600 - +0.4

Or see this region's nucleotide sequence