Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_516 and HP15_517 are separated by 68 nucleotides HP15_517 and HP15_518 overlap by 4 nucleotides HP15_518 and HP15_519 are separated by 4 nucleotides HP15_519 and HP15_520 are separated by 5 nucleotides
HP15_516: HP15_516 - hypothetical protein, at 529,732 to 529,857
_516
HP15_517: HP15_517 - membrane or secreted protein, at 529,926 to 530,321
_517
HP15_518: HP15_518 - type IV pilus assembly protein PilW, at 530,318 to 531,349
_518
HP15_519: HP15_519 - membrane or secreted protein, at 531,354 to 531,962
_519
HP15_520: HP15_520 - type IV pilus biogenesis protein, at 531,968 to 535,465
_520
Position (kb) 530
531
532 Strain fitness (log2 ratio) -1
0
1
2
3 at 529.421 kb on - strand at 529.430 kb on - strand at 529.467 kb on - strand at 529.479 kb on - strand at 529.556 kb on - strand at 529.556 kb on - strand at 529.568 kb on - strand at 529.860 kb on - strand at 529.898 kb on + strand at 529.906 kb on - strand at 530.152 kb on + strand, within HP15_517 at 530.160 kb on - strand, within HP15_517 at 530.215 kb on - strand, within HP15_517 at 530.254 kb on + strand, within HP15_517 at 530.627 kb on - strand, within HP15_518 at 530.727 kb on + strand, within HP15_518 at 530.867 kb on + strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.252 kb on + strand at 531.252 kb on + strand at 531.260 kb on - strand at 531.751 kb on - strand, within HP15_519 at 532.004 kb on + strand at 532.082 kb on - strand at 532.119 kb on + strand at 532.216 kb on - strand at 532.216 kb on - strand at 532.233 kb on + strand at 532.233 kb on + strand at 532.264 kb on - strand at 532.291 kb on - strand at 532.328 kb on + strand, within HP15_520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 529,421 - +0.3 529,430 - +0.4 529,467 - -0.6 529,479 - -0.5 529,556 - -0.2 529,556 - -0.2 529,568 - -0.2 529,860 - +2.7 529,898 + +2.2 529,906 - +0.6 530,152 + HP15_517 0.57 -0.2 530,160 - HP15_517 0.59 -0.6 530,215 - HP15_517 0.73 -0.4 530,254 + HP15_517 0.83 +2.1 530,627 - HP15_518 0.30 -0.6 530,727 + HP15_518 0.40 -0.5 530,867 + HP15_518 0.53 +1.5 531,033 - HP15_518 0.69 +0.3 531,033 - HP15_518 0.69 -0.4 531,099 + HP15_518 0.76 +3.0 531,099 + HP15_518 0.76 -0.6 531,108 - HP15_518 0.77 -0.2 531,108 - HP15_518 0.77 +1.2 531,108 - HP15_518 0.77 +0.9 531,207 + HP15_518 0.86 -1.0 531,207 + HP15_518 0.86 +1.4 531,252 + -1.3 531,252 + -0.6 531,260 - -0.6 531,751 - HP15_519 0.65 -1.3 532,004 + -0.0 532,082 - +2.8 532,119 + +0.0 532,216 - +1.6 532,216 - -0.7 532,233 + +0.1 532,233 + -0.7 532,264 - -0.6 532,291 - +0.2 532,328 + HP15_520 0.10 +2.4
Or see this region's nucleotide sequence