Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g112

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g111 and HP15_p187g112 are separated by 14 nucleotidesHP15_p187g112 and HP15_p187g113 are separated by 253 nucleotides HP15_p187g111: HP15_p187g111 - PKD domain containing protein, at 105,705 to 108,227 _p187g111 HP15_p187g112: HP15_p187g112 - lipoprotein, at 108,242 to 108,814 _p187g112 HP15_p187g113: HP15_p187g113 - metallophosphoesterase-like protein, at 109,068 to 111,152 _p187g113 Position (kb) 108 109Strain fitness (log2 ratio) -1 0 1 2at 107.305 kb on + strand, within HP15_p187g111at 107.305 kb on + strand, within HP15_p187g111at 107.323 kb on - strand, within HP15_p187g111at 107.371 kb on - strand, within HP15_p187g111at 107.410 kb on + strand, within HP15_p187g111at 107.535 kb on + strand, within HP15_p187g111at 107.543 kb on - strand, within HP15_p187g111at 107.575 kb on - strand, within HP15_p187g111at 107.668 kb on - strand, within HP15_p187g111at 107.668 kb on - strand, within HP15_p187g111at 107.690 kb on + strand, within HP15_p187g111at 107.690 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.790 kb on + strand, within HP15_p187g111at 107.793 kb on + strand, within HP15_p187g111at 107.826 kb on - strand, within HP15_p187g111at 107.873 kb on - strand, within HP15_p187g111at 107.908 kb on + strand, within HP15_p187g111at 107.975 kb on - strandat 107.979 kb on - strandat 108.001 kb on - strandat 108.034 kb on - strandat 108.044 kb on + strandat 108.093 kb on + strandat 108.110 kb on - strandat 108.156 kb on - strandat 108.209 kb on - strandat 108.220 kb on - strandat 108.234 kb on + strandat 108.295 kb on - strandat 108.295 kb on - strandat 108.303 kb on + strand, within HP15_p187g112at 108.313 kb on + strand, within HP15_p187g112at 108.314 kb on + strand, within HP15_p187g112at 108.321 kb on - strand, within HP15_p187g112at 108.338 kb on - strand, within HP15_p187g112at 108.502 kb on + strand, within HP15_p187g112at 108.502 kb on + strand, within HP15_p187g112at 108.519 kb on + strand, within HP15_p187g112at 108.520 kb on - strand, within HP15_p187g112at 108.527 kb on - strand, within HP15_p187g112at 108.527 kb on - strand, within HP15_p187g112at 108.594 kb on + strand, within HP15_p187g112at 108.602 kb on - strand, within HP15_p187g112at 108.608 kb on + strand, within HP15_p187g112at 108.608 kb on + strand, within HP15_p187g112at 108.616 kb on - strand, within HP15_p187g112at 108.662 kb on - strand, within HP15_p187g112at 108.665 kb on + strand, within HP15_p187g112at 108.668 kb on - strand, within HP15_p187g112at 108.673 kb on - strand, within HP15_p187g112at 108.695 kb on + strand, within HP15_p187g112at 108.708 kb on + strand, within HP15_p187g112at 108.717 kb on + strand, within HP15_p187g112at 108.728 kb on + strand, within HP15_p187g112at 108.754 kb on + strand, within HP15_p187g112at 108.810 kb on - strandat 108.810 kb on - strandat 108.812 kb on + strandat 108.812 kb on + strandat 108.812 kb on + strandat 108.820 kb on - strandat 108.887 kb on - strandat 108.952 kb on + strandat 108.977 kb on + strandat 109.006 kb on - strandat 109.020 kb on - strandat 109.034 kb on + strandat 109.037 kb on - strandat 109.037 kb on - strandat 109.056 kb on - strandat 109.061 kb on - strandat 109.090 kb on + strandat 109.098 kb on - strandat 109.119 kb on - strandat 109.123 kb on - strandat 109.154 kb on + strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.182 kb on - strandat 109.197 kb on - strandat 109.197 kb on - strandat 109.266 kb on + strandat 109.266 kb on - strandat 109.290 kb on + strand, within HP15_p187g113at 109.298 kb on - strand, within HP15_p187g113at 109.298 kb on - strand, within HP15_p187g113at 109.308 kb on - strand, within HP15_p187g113at 109.309 kb on + strand, within HP15_p187g113at 109.309 kb on + strand, within HP15_p187g113at 109.319 kb on - strand, within HP15_p187g113at 109.341 kb on + strand, within HP15_p187g113at 109.349 kb on - strand, within HP15_p187g113at 109.349 kb on - strand, within HP15_p187g113at 109.378 kb on - strand, within HP15_p187g113at 109.380 kb on + strand, within HP15_p187g113at 109.380 kb on + strand, within HP15_p187g113at 109.380 kb on + strand, within HP15_p187g113at 109.383 kb on - strand, within HP15_p187g113at 109.388 kb on - strand, within HP15_p187g113at 109.388 kb on - strand, within HP15_p187g113at 109.388 kb on - strand, within HP15_p187g113at 109.398 kb on - strand, within HP15_p187g113at 109.437 kb on - strand, within HP15_p187g113at 109.458 kb on - strand, within HP15_p187g113at 109.458 kb on - strand, within HP15_p187g113at 109.507 kb on + strand, within HP15_p187g113at 109.512 kb on - strand, within HP15_p187g113at 109.519 kb on + strand, within HP15_p187g113at 109.519 kb on + strand, within HP15_p187g113at 109.618 kb on + strand, within HP15_p187g113at 109.633 kb on + strand, within HP15_p187g113at 109.703 kb on - strand, within HP15_p187g113at 109.758 kb on - strand, within HP15_p187g113at 109.787 kb on + strand, within HP15_p187g113

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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107,305 + HP15_p187g111 0.63 -0.3
107,305 + HP15_p187g111 0.63 +1.5
107,323 - HP15_p187g111 0.64 -0.5
107,371 - HP15_p187g111 0.66 -0.4
107,410 + HP15_p187g111 0.68 +2.0
107,535 + HP15_p187g111 0.73 +2.2
107,543 - HP15_p187g111 0.73 -0.0
107,575 - HP15_p187g111 0.74 +0.8
107,668 - HP15_p187g111 0.78 +2.3
107,668 - HP15_p187g111 0.78 -0.8
107,690 + HP15_p187g111 0.79 +0.5
107,690 - HP15_p187g111 0.79 +2.1
107,765 - HP15_p187g111 0.82 -0.2
107,765 - HP15_p187g111 0.82 -0.5
107,765 - HP15_p187g111 0.82 -0.7
107,765 - HP15_p187g111 0.82 +0.8
107,765 - HP15_p187g111 0.82 -1.7
107,765 - HP15_p187g111 0.82 +2.0
107,790 + HP15_p187g111 0.83 -0.6
107,793 + HP15_p187g111 0.83 +2.1
107,826 - HP15_p187g111 0.84 -0.5
107,873 - HP15_p187g111 0.86 -0.9
107,908 + HP15_p187g111 0.87 -0.4
107,975 - -0.7
107,979 - +1.0
108,001 - -0.9
108,034 - +2.1
108,044 + -0.2
108,093 + +1.1
108,110 - +2.2
108,156 - +1.1
108,209 - +2.7
108,220 - -0.4
108,234 + +1.7
108,295 - -0.6
108,295 - +2.2
108,303 + HP15_p187g112 0.11 +0.1
108,313 + HP15_p187g112 0.12 +0.6
108,314 + HP15_p187g112 0.13 +1.3
108,321 - HP15_p187g112 0.14 -0.1
108,338 - HP15_p187g112 0.17 -0.2
108,502 + HP15_p187g112 0.45 +0.9
108,502 + HP15_p187g112 0.45 +1.8
108,519 + HP15_p187g112 0.48 -0.5
108,520 - HP15_p187g112 0.49 +2.0
108,527 - HP15_p187g112 0.50 -0.9
108,527 - HP15_p187g112 0.50 +0.6
108,594 + HP15_p187g112 0.61 +0.8
108,602 - HP15_p187g112 0.63 -0.1
108,608 + HP15_p187g112 0.64 -0.6
108,608 + HP15_p187g112 0.64 +0.2
108,616 - HP15_p187g112 0.65 +0.6
108,662 - HP15_p187g112 0.73 +1.7
108,665 + HP15_p187g112 0.74 +1.8
108,668 - HP15_p187g112 0.74 +0.0
108,673 - HP15_p187g112 0.75 +1.8
108,695 + HP15_p187g112 0.79 +2.3
108,708 + HP15_p187g112 0.81 +0.2
108,717 + HP15_p187g112 0.83 +0.1
108,728 + HP15_p187g112 0.85 +2.4
108,754 + HP15_p187g112 0.89 +1.8
108,810 - -0.1
108,810 - +0.7
108,812 + +1.9
108,812 + -0.2
108,812 + -0.6
108,820 - +1.9
108,887 - -1.5
108,952 + +1.8
108,977 + +2.2
109,006 - -1.0
109,020 - -0.6
109,034 + -0.6
109,037 - -0.3
109,037 - -0.6
109,056 - +0.0
109,061 - +2.3
109,090 + +0.5
109,098 - +1.2
109,119 - -1.1
109,123 - -0.3
109,154 + -0.3
109,154 - +2.1
109,154 - -0.3
109,182 - -0.6
109,197 - -0.3
109,197 - +1.3
109,266 + -0.5
109,266 - -0.2
109,290 + HP15_p187g113 0.11 -0.7
109,298 - HP15_p187g113 0.11 +1.5
109,298 - HP15_p187g113 0.11 +1.1
109,308 - HP15_p187g113 0.12 -0.7
109,309 + HP15_p187g113 0.12 -0.4
109,309 + HP15_p187g113 0.12 +2.5
109,319 - HP15_p187g113 0.12 -0.3
109,341 + HP15_p187g113 0.13 +0.1
109,349 - HP15_p187g113 0.13 -0.4
109,349 - HP15_p187g113 0.13 -1.2
109,378 - HP15_p187g113 0.15 -0.5
109,380 + HP15_p187g113 0.15 -0.5
109,380 + HP15_p187g113 0.15 -0.3
109,380 + HP15_p187g113 0.15 -0.8
109,383 - HP15_p187g113 0.15 +1.6
109,388 - HP15_p187g113 0.15 +2.1
109,388 - HP15_p187g113 0.15 +1.7
109,388 - HP15_p187g113 0.15 -1.5
109,398 - HP15_p187g113 0.16 +0.3
109,437 - HP15_p187g113 0.18 -0.4
109,458 - HP15_p187g113 0.19 -0.6
109,458 - HP15_p187g113 0.19 +2.0
109,507 + HP15_p187g113 0.21 -0.5
109,512 - HP15_p187g113 0.21 -0.4
109,519 + HP15_p187g113 0.22 +1.8
109,519 + HP15_p187g113 0.22 +1.3
109,618 + HP15_p187g113 0.26 +1.9
109,633 + HP15_p187g113 0.27 -0.1
109,703 - HP15_p187g113 0.30 -0.5
109,758 - HP15_p187g113 0.33 -0.4
109,787 + HP15_p187g113 0.34 -0.1

Or see this region's nucleotide sequence