Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g30

Experiment: D-Glucosamine Hydrochloride as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p187g27 and HP15_p187g28 are separated by 129 nucleotidesHP15_p187g28 and HP15_p187g29 are separated by 34 nucleotidesHP15_p187g29 and HP15_p187g30 are separated by 125 nucleotidesHP15_p187g30 and HP15_p187g31 are separated by 214 nucleotides HP15_p187g27: HP15_p187g27 - hypothetical protein, at 21,495 to 21,662 _p187g27 HP15_p187g28: HP15_p187g28 - hypothetical protein, at 21,792 to 21,929 _p187g28 HP15_p187g29: HP15_p187g29 - hypothetical protein, at 21,964 to 22,341 _p187g29 HP15_p187g30: HP15_p187g30 - conserved hypothetical protein, membrane, at 22,467 to 22,688 _p187g30 HP15_p187g31: HP15_p187g31 - protein containing nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase domain, at 22,903 to 24,063 _p187g31 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.518 kb on - strand, within HP15_p187g27at 21.551 kb on + strand, within HP15_p187g27at 21.606 kb on + strand, within HP15_p187g27at 21.626 kb on + strand, within HP15_p187g27at 21.626 kb on + strand, within HP15_p187g27at 21.646 kb on + strandat 21.646 kb on + strandat 21.646 kb on + strandat 21.664 kb on - strandat 21.690 kb on + strandat 21.698 kb on - strandat 21.713 kb on + strandat 21.713 kb on + strandat 21.721 kb on - strandat 21.731 kb on - strandat 21.758 kb on + strandat 21.829 kb on - strand, within HP15_p187g28at 21.829 kb on - strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.855 kb on - strand, within HP15_p187g28at 21.866 kb on - strand, within HP15_p187g28at 21.928 kb on + strandat 21.928 kb on + strandat 21.999 kb on + strandat 21.999 kb on + strandat 22.007 kb on - strand, within HP15_p187g29at 22.007 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.057 kb on - strand, within HP15_p187g29at 22.120 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.225 kb on + strand, within HP15_p187g29at 22.231 kb on - strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.313 kb on + strandat 22.313 kb on + strandat 22.313 kb on + strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.326 kb on - strandat 22.331 kb on - strandat 22.413 kb on - strandat 22.413 kb on - strandat 22.478 kb on - strandat 22.483 kb on + strandat 22.525 kb on - strand, within HP15_p187g30at 22.525 kb on - strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.640 kb on - strand, within HP15_p187g30at 22.651 kb on + strand, within HP15_p187g30at 22.659 kb on - strand, within HP15_p187g30at 22.735 kb on - strandat 22.737 kb on + strandat 22.737 kb on + strandat 22.744 kb on + strandat 22.744 kb on + strandat 22.744 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.880 kb on - strandat 22.886 kb on + strandat 22.894 kb on - strandat 22.894 kb on - strandat 22.904 kb on - strandat 22.986 kb on + strandat 23.013 kb on - strandat 23.036 kb on - strandat 23.051 kb on + strand, within HP15_p187g31at 23.080 kb on + strand, within HP15_p187g31at 23.149 kb on + strand, within HP15_p187g31at 23.150 kb on + strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.167 kb on + strand, within HP15_p187g31at 23.204 kb on + strand, within HP15_p187g31at 23.204 kb on + strand, within HP15_p187g31at 23.212 kb on - strand, within HP15_p187g31at 23.217 kb on - strand, within HP15_p187g31at 23.233 kb on - strand, within HP15_p187g31at 23.297 kb on - strand, within HP15_p187g31at 23.298 kb on - strand, within HP15_p187g31at 23.329 kb on + strand, within HP15_p187g31at 23.339 kb on - strand, within HP15_p187g31at 23.377 kb on + strand, within HP15_p187g31at 23.382 kb on + strand, within HP15_p187g31at 23.390 kb on - strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on - strand, within HP15_p187g31at 23.403 kb on - strand, within HP15_p187g31at 23.405 kb on + strand, within HP15_p187g31at 23.405 kb on + strand, within HP15_p187g31at 23.407 kb on + strand, within HP15_p187g31at 23.412 kb on + strand, within HP15_p187g31at 23.413 kb on - strand, within HP15_p187g31at 23.413 kb on - strand, within HP15_p187g31at 23.442 kb on - strand, within HP15_p187g31at 23.511 kb on + strand, within HP15_p187g31at 23.519 kb on - strand, within HP15_p187g31at 23.528 kb on - strand, within HP15_p187g31at 23.547 kb on + strand, within HP15_p187g31at 23.547 kb on + strand, within HP15_p187g31at 23.560 kb on + strand, within HP15_p187g31at 23.612 kb on - strand, within HP15_p187g31at 23.651 kb on + strand, within HP15_p187g31

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
remove
21,518 - HP15_p187g27 0.14 -0.1
21,551 + HP15_p187g27 0.33 +1.6
21,606 + HP15_p187g27 0.66 -0.8
21,626 + HP15_p187g27 0.78 -0.3
21,626 + HP15_p187g27 0.78 -0.1
21,646 + -1.0
21,646 + -0.3
21,646 + -0.4
21,664 - +2.1
21,690 + +0.0
21,698 - -0.9
21,713 + -1.2
21,713 + -0.0
21,721 - +2.7
21,731 - -0.4
21,758 + +2.0
21,829 - HP15_p187g28 0.27 -1.6
21,829 - HP15_p187g28 0.27 +0.1
21,847 + HP15_p187g28 0.40 -0.5
21,847 + HP15_p187g28 0.40 +0.0
21,847 + HP15_p187g28 0.40 +1.5
21,855 - HP15_p187g28 0.46 +1.8
21,866 - HP15_p187g28 0.54 -0.1
21,928 + +2.3
21,928 + -0.5
21,999 + +1.9
21,999 + -1.1
22,007 - HP15_p187g29 0.11 -0.4
22,007 - HP15_p187g29 0.11 +1.9
22,021 - HP15_p187g29 0.15 +0.1
22,021 - HP15_p187g29 0.15 +2.3
22,057 - HP15_p187g29 0.25 -0.6
22,120 + HP15_p187g29 0.41 +1.8
22,223 + HP15_p187g29 0.69 +1.8
22,223 + HP15_p187g29 0.69 +2.4
22,225 + HP15_p187g29 0.69 -0.5
22,231 - HP15_p187g29 0.71 +0.9
22,260 + HP15_p187g29 0.78 +1.9
22,260 + HP15_p187g29 0.78 +2.1
22,260 + HP15_p187g29 0.78 -0.7
22,268 - HP15_p187g29 0.80 +0.1
22,268 - HP15_p187g29 0.80 -0.9
22,268 - HP15_p187g29 0.80 +0.2
22,313 + +1.5
22,313 + +0.0
22,313 + +1.3
22,321 - -1.7
22,321 - +2.5
22,321 - +1.9
22,321 - +0.4
22,321 - +0.8
22,326 - +0.2
22,331 - +0.0
22,413 - +2.0
22,413 - +0.6
22,478 - -1.0
22,483 + -0.5
22,525 - HP15_p187g30 0.26 -0.1
22,525 - HP15_p187g30 0.26 -0.7
22,617 + HP15_p187g30 0.68 +0.5
22,617 + HP15_p187g30 0.68 -1.1
22,632 + HP15_p187g30 0.74 -0.2
22,632 + HP15_p187g30 0.74 -0.2
22,632 + HP15_p187g30 0.74 +1.7
22,640 - HP15_p187g30 0.78 +0.3
22,651 + HP15_p187g30 0.83 -0.5
22,659 - HP15_p187g30 0.86 -0.2
22,735 - +2.4
22,737 + +2.0
22,737 + -0.2
22,744 + -0.7
22,744 + -0.4
22,744 + +0.4
22,749 + +1.4
22,749 + +1.8
22,749 + +0.2
22,749 + +0.1
22,749 + +2.0
22,749 + +2.6
22,749 + +1.6
22,749 + +2.1
22,749 + -0.6
22,757 - +1.2
22,757 - -1.3
22,757 - -0.5
22,757 - -1.1
22,757 - +0.3
22,757 - -0.7
22,880 - -0.7
22,886 + +0.9
22,894 - -0.3
22,894 - +2.0
22,904 - -0.9
22,986 + -0.9
23,013 - -0.3
23,036 - +0.7
23,051 + HP15_p187g31 0.13 +0.7
23,080 + HP15_p187g31 0.15 -0.5
23,149 + HP15_p187g31 0.21 -0.2
23,150 + HP15_p187g31 0.21 +0.0
23,157 - HP15_p187g31 0.22 -1.4
23,157 - HP15_p187g31 0.22 +2.0
23,157 - HP15_p187g31 0.22 +0.3
23,157 - HP15_p187g31 0.22 +0.0
23,167 + HP15_p187g31 0.23 +2.1
23,204 + HP15_p187g31 0.26 -0.2
23,204 + HP15_p187g31 0.26 +0.0
23,212 - HP15_p187g31 0.27 +0.1
23,217 - HP15_p187g31 0.27 +1.5
23,233 - HP15_p187g31 0.28 +1.3
23,297 - HP15_p187g31 0.34 +0.2
23,298 - HP15_p187g31 0.34 -0.8
23,329 + HP15_p187g31 0.37 +0.1
23,339 - HP15_p187g31 0.38 -0.3
23,377 + HP15_p187g31 0.41 -0.4
23,382 + HP15_p187g31 0.41 -0.6
23,390 - HP15_p187g31 0.42 -2.3
23,395 + HP15_p187g31 0.42 -0.7
23,395 + HP15_p187g31 0.42 +2.1
23,395 + HP15_p187g31 0.42 -2.2
23,395 - HP15_p187g31 0.42 -0.3
23,403 - HP15_p187g31 0.43 -0.3
23,405 + HP15_p187g31 0.43 -0.3
23,405 + HP15_p187g31 0.43 -0.3
23,407 + HP15_p187g31 0.43 -0.5
23,412 + HP15_p187g31 0.44 -0.9
23,413 - HP15_p187g31 0.44 +2.0
23,413 - HP15_p187g31 0.44 +1.0
23,442 - HP15_p187g31 0.46 -0.3
23,511 + HP15_p187g31 0.52 -0.4
23,519 - HP15_p187g31 0.53 +1.8
23,528 - HP15_p187g31 0.54 +1.1
23,547 + HP15_p187g31 0.55 -0.5
23,547 + HP15_p187g31 0.55 -0.1
23,560 + HP15_p187g31 0.57 -0.5
23,612 - HP15_p187g31 0.61 +2.3
23,651 + HP15_p187g31 0.64 +1.9

Or see this region's nucleotide sequence