Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4150 and HP15_4151 are separated by 5 nucleotides HP15_4151 and HP15_4152 are separated by 770 nucleotides
HP15_4150: HP15_4150 - sensory box/GGDEF family protein, at 4,385,544 to 4,387,202
_4150
HP15_4151: HP15_4151 - GGDEF domain-like protein, at 4,387,208 to 4,388,401
_4151
HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951
_4152
Position (kb)
4387
4388
4389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4386.249 kb on + strand, within HP15_4150 at 4386.282 kb on + strand, within HP15_4150 at 4386.290 kb on - strand, within HP15_4150 at 4386.411 kb on - strand, within HP15_4150 at 4386.411 kb on - strand, within HP15_4150 at 4386.520 kb on + strand, within HP15_4150 at 4386.657 kb on - strand, within HP15_4150 at 4386.657 kb on - strand, within HP15_4150 at 4386.664 kb on - strand, within HP15_4150 at 4386.882 kb on + strand, within HP15_4150 at 4386.978 kb on - strand, within HP15_4150 at 4386.993 kb on - strand, within HP15_4150 at 4387.011 kb on + strand, within HP15_4150 at 4387.020 kb on + strand, within HP15_4150 at 4387.142 kb on + strand at 4387.264 kb on - strand at 4387.295 kb on + strand at 4387.295 kb on + strand at 4387.303 kb on - strand at 4387.303 kb on - strand at 4387.303 kb on - strand at 4387.303 kb on - strand at 4387.333 kb on + strand, within HP15_4151 at 4387.353 kb on - strand, within HP15_4151 at 4387.492 kb on + strand, within HP15_4151 at 4387.520 kb on + strand, within HP15_4151 at 4387.597 kb on + strand, within HP15_4151 at 4387.626 kb on + strand, within HP15_4151 at 4387.627 kb on - strand, within HP15_4151 at 4387.724 kb on - strand, within HP15_4151 at 4387.804 kb on + strand, within HP15_4151 at 4387.812 kb on - strand, within HP15_4151 at 4387.812 kb on - strand, within HP15_4151 at 4387.812 kb on - strand, within HP15_4151 at 4387.849 kb on - strand, within HP15_4151 at 4387.949 kb on - strand, within HP15_4151 at 4388.042 kb on - strand, within HP15_4151 at 4388.042 kb on - strand, within HP15_4151 at 4388.042 kb on - strand, within HP15_4151 at 4388.042 kb on - strand, within HP15_4151 at 4388.042 kb on - strand, within HP15_4151 at 4388.167 kb on - strand, within HP15_4151 at 4388.203 kb on + strand, within HP15_4151 at 4388.257 kb on + strand, within HP15_4151 at 4388.283 kb on - strand at 4388.586 kb on + strand at 4388.637 kb on + strand at 4388.675 kb on - strand at 4388.675 kb on - strand at 4388.703 kb on - strand at 4388.705 kb on + strand at 4388.728 kb on + strand at 4388.743 kb on + strand at 4388.743 kb on + strand at 4388.751 kb on - strand at 4388.876 kb on - strand at 4388.975 kb on - strand at 4388.991 kb on + strand at 4388.997 kb on - strand at 4389.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,386,249 + HP15_4150 0.42 -0.3 4,386,282 + HP15_4150 0.44 -0.3 4,386,290 - HP15_4150 0.45 -0.5 4,386,411 - HP15_4150 0.52 -0.1 4,386,411 - HP15_4150 0.52 +0.1 4,386,520 + HP15_4150 0.59 +2.2 4,386,657 - HP15_4150 0.67 +0.1 4,386,657 - HP15_4150 0.67 -0.0 4,386,664 - HP15_4150 0.68 +1.1 4,386,882 + HP15_4150 0.81 -0.0 4,386,978 - HP15_4150 0.86 -1.6 4,386,993 - HP15_4150 0.87 +0.7 4,387,011 + HP15_4150 0.88 -0.3 4,387,020 + HP15_4150 0.89 -0.2 4,387,142 + -1.5 4,387,264 - -0.1 4,387,295 + -0.4 4,387,295 + -0.3 4,387,303 - -0.3 4,387,303 - -1.3 4,387,303 - +0.9 4,387,303 - +0.1 4,387,333 + HP15_4151 0.10 +2.0 4,387,353 - HP15_4151 0.12 +1.7 4,387,492 + HP15_4151 0.24 +0.5 4,387,520 + HP15_4151 0.26 +1.9 4,387,597 + HP15_4151 0.33 -1.3 4,387,626 + HP15_4151 0.35 +2.7 4,387,627 - HP15_4151 0.35 -0.8 4,387,724 - HP15_4151 0.43 -0.2 4,387,804 + HP15_4151 0.50 -0.8 4,387,812 - HP15_4151 0.51 -0.2 4,387,812 - HP15_4151 0.51 +0.0 4,387,812 - HP15_4151 0.51 +2.1 4,387,849 - HP15_4151 0.54 -1.8 4,387,949 - HP15_4151 0.62 +0.0 4,388,042 - HP15_4151 0.70 -0.8 4,388,042 - HP15_4151 0.70 +0.6 4,388,042 - HP15_4151 0.70 +2.2 4,388,042 - HP15_4151 0.70 +1.8 4,388,042 - HP15_4151 0.70 +1.5 4,388,167 - HP15_4151 0.80 +1.3 4,388,203 + HP15_4151 0.83 +2.4 4,388,257 + HP15_4151 0.88 +1.0 4,388,283 - -1.3 4,388,586 + -0.1 4,388,637 + +2.2 4,388,675 - +2.1 4,388,675 - +2.5 4,388,703 - -0.5 4,388,705 + -0.7 4,388,728 + -0.3 4,388,743 + +0.6 4,388,743 + -0.2 4,388,751 - -1.0 4,388,876 - -0.8 4,388,975 - +1.1 4,388,991 + +2.3 4,388,997 - -0.7 4,389,235 + -1.2
Or see this region's nucleotide sequence