Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4067 and HP15_4068 are separated by 32 nucleotides HP15_4068 and HP15_4069 are separated by 4 nucleotides HP15_4069 and HP15_4070 are separated by 62 nucleotides HP15_4070 and HP15_4071 overlap by 28 nucleotides HP15_4071 and HP15_4072 overlap by 1 nucleotides
HP15_4067: HP15_4067 - spermidine/putrescine ABC transporter ATPase subunit, at 4,301,705 to 4,302,793
_4067
HP15_4068: HP15_4068 - binding-protein-dependent transport systems inner membrane component, at 4,302,826 to 4,303,650
_4068
HP15_4069: HP15_4069 - binding-protein-dependent transport systems inner membrane component, at 4,303,655 to 4,304,506
_4069
HP15_4070: HP15_4070 - antibiotic biosynthesis monooxygenase family enzyme, at 4,304,569 to 4,304,883
_4070
HP15_4071: HP15_4071 - hypothetical protein, at 4,304,856 to 4,304,969
_4071
HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230
_4072
Position (kb)
4303
4304
4305 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4302.660 kb on - strand, within HP15_4067 at 4302.816 kb on + strand at 4302.843 kb on + strand at 4302.898 kb on + strand at 4302.937 kb on - strand, within HP15_4068 at 4302.943 kb on - strand, within HP15_4068 at 4302.983 kb on + strand, within HP15_4068 at 4303.051 kb on + strand, within HP15_4068 at 4303.072 kb on + strand, within HP15_4068 at 4303.109 kb on + strand, within HP15_4068 at 4303.151 kb on - strand, within HP15_4068 at 4303.201 kb on + strand, within HP15_4068 at 4303.201 kb on + strand, within HP15_4068 at 4303.275 kb on - strand, within HP15_4068 at 4303.310 kb on + strand, within HP15_4068 at 4303.324 kb on + strand, within HP15_4068 at 4303.370 kb on + strand, within HP15_4068 at 4303.395 kb on + strand, within HP15_4068 at 4303.403 kb on - strand, within HP15_4068 at 4303.403 kb on - strand, within HP15_4068 at 4303.491 kb on - strand, within HP15_4068 at 4303.553 kb on + strand, within HP15_4068 at 4303.553 kb on + strand, within HP15_4068 at 4303.561 kb on - strand, within HP15_4068 at 4303.567 kb on - strand, within HP15_4068 at 4303.622 kb on - strand at 4303.670 kb on - strand at 4303.771 kb on - strand, within HP15_4069 at 4303.803 kb on + strand, within HP15_4069 at 4303.833 kb on + strand, within HP15_4069 at 4303.840 kb on + strand, within HP15_4069 at 4303.916 kb on + strand, within HP15_4069 at 4303.929 kb on - strand, within HP15_4069 at 4303.929 kb on - strand, within HP15_4069 at 4303.931 kb on + strand, within HP15_4069 at 4303.931 kb on + strand, within HP15_4069 at 4303.931 kb on + strand, within HP15_4069 at 4303.931 kb on + strand, within HP15_4069 at 4303.939 kb on - strand, within HP15_4069 at 4303.939 kb on - strand, within HP15_4069 at 4303.972 kb on + strand, within HP15_4069 at 4303.972 kb on + strand, within HP15_4069 at 4304.033 kb on + strand, within HP15_4069 at 4304.054 kb on - strand, within HP15_4069 at 4304.097 kb on - strand, within HP15_4069 at 4304.131 kb on - strand, within HP15_4069 at 4304.131 kb on - strand, within HP15_4069 at 4304.165 kb on + strand, within HP15_4069 at 4304.173 kb on - strand, within HP15_4069 at 4304.173 kb on - strand, within HP15_4069 at 4304.228 kb on + strand, within HP15_4069 at 4304.236 kb on - strand, within HP15_4069 at 4304.236 kb on - strand, within HP15_4069 at 4304.393 kb on + strand, within HP15_4069 at 4304.393 kb on - strand, within HP15_4069 at 4304.395 kb on + strand, within HP15_4069 at 4304.403 kb on - strand, within HP15_4069 at 4304.403 kb on - strand, within HP15_4069 at 4304.490 kb on - strand at 4304.542 kb on - strand at 4304.587 kb on - strand at 4304.775 kb on - strand, within HP15_4070 at 4304.796 kb on + strand, within HP15_4070 at 4304.806 kb on + strand, within HP15_4070 at 4304.992 kb on + strand at 4305.002 kb on - strand at 4305.007 kb on + strand at 4305.015 kb on - strand at 4305.021 kb on - strand at 4305.151 kb on - strand at 4305.280 kb on + strand, within HP15_4072 at 4305.288 kb on - strand, within HP15_4072 at 4305.288 kb on - strand, within HP15_4072 at 4305.393 kb on - strand, within HP15_4072 at 4305.393 kb on - strand, within HP15_4072 at 4305.396 kb on + strand, within HP15_4072 at 4305.399 kb on - strand, within HP15_4072 at 4305.454 kb on + strand, within HP15_4072 at 4305.481 kb on - strand, within HP15_4072
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,302,660 - HP15_4067 0.88 -0.4 4,302,816 + +1.5 4,302,843 + +1.7 4,302,898 + -0.0 4,302,937 - HP15_4068 0.13 +2.5 4,302,943 - HP15_4068 0.14 -0.6 4,302,983 + HP15_4068 0.19 +1.6 4,303,051 + HP15_4068 0.27 -1.6 4,303,072 + HP15_4068 0.30 +0.0 4,303,109 + HP15_4068 0.34 +2.0 4,303,151 - HP15_4068 0.39 -0.9 4,303,201 + HP15_4068 0.45 -0.8 4,303,201 + HP15_4068 0.45 -0.5 4,303,275 - HP15_4068 0.54 +0.2 4,303,310 + HP15_4068 0.59 -0.4 4,303,324 + HP15_4068 0.60 +2.1 4,303,370 + HP15_4068 0.66 +1.9 4,303,395 + HP15_4068 0.69 +3.3 4,303,403 - HP15_4068 0.70 +1.4 4,303,403 - HP15_4068 0.70 -0.2 4,303,491 - HP15_4068 0.81 +2.0 4,303,553 + HP15_4068 0.88 -1.3 4,303,553 + HP15_4068 0.88 -0.4 4,303,561 - HP15_4068 0.89 +0.1 4,303,567 - HP15_4068 0.90 -0.0 4,303,622 - -0.1 4,303,670 - -0.2 4,303,771 - HP15_4069 0.14 -1.4 4,303,803 + HP15_4069 0.17 -0.1 4,303,833 + HP15_4069 0.21 -1.6 4,303,840 + HP15_4069 0.22 -1.7 4,303,916 + HP15_4069 0.31 +1.7 4,303,929 - HP15_4069 0.32 -1.2 4,303,929 - HP15_4069 0.32 +0.0 4,303,931 + HP15_4069 0.32 +2.1 4,303,931 + HP15_4069 0.32 -0.2 4,303,931 + HP15_4069 0.32 +2.2 4,303,931 + HP15_4069 0.32 +0.2 4,303,939 - HP15_4069 0.33 +0.0 4,303,939 - HP15_4069 0.33 +0.4 4,303,972 + HP15_4069 0.37 -0.5 4,303,972 + HP15_4069 0.37 -1.0 4,304,033 + HP15_4069 0.44 +2.4 4,304,054 - HP15_4069 0.47 -0.5 4,304,097 - HP15_4069 0.52 -0.4 4,304,131 - HP15_4069 0.56 +1.8 4,304,131 - HP15_4069 0.56 +0.1 4,304,165 + HP15_4069 0.60 -0.1 4,304,173 - HP15_4069 0.61 +0.1 4,304,173 - HP15_4069 0.61 -0.3 4,304,228 + HP15_4069 0.67 -0.7 4,304,236 - HP15_4069 0.68 -0.6 4,304,236 - HP15_4069 0.68 -0.5 4,304,393 + HP15_4069 0.87 -0.6 4,304,393 - HP15_4069 0.87 -0.4 4,304,395 + HP15_4069 0.87 +0.7 4,304,403 - HP15_4069 0.88 -1.3 4,304,403 - HP15_4069 0.88 +0.5 4,304,490 - -0.6 4,304,542 - +0.6 4,304,587 - -1.1 4,304,775 - HP15_4070 0.65 -1.4 4,304,796 + HP15_4070 0.72 +1.9 4,304,806 + HP15_4070 0.75 -0.2 4,304,992 + +2.1 4,305,002 - -0.4 4,305,007 + +2.2 4,305,015 - +1.9 4,305,021 - -0.1 4,305,151 - -0.3 4,305,280 + HP15_4072 0.14 -0.4 4,305,288 - HP15_4072 0.14 +1.8 4,305,288 - HP15_4072 0.14 -0.3 4,305,393 - HP15_4072 0.19 +1.7 4,305,393 - HP15_4072 0.19 +2.0 4,305,396 + HP15_4072 0.19 -0.1 4,305,399 - HP15_4072 0.19 -0.5 4,305,454 + HP15_4072 0.21 -0.6 4,305,481 - HP15_4072 0.23 -0.5
Or see this region's nucleotide sequence