Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4030 and HP15_4031 are separated by 5 nucleotides HP15_4031 and HP15_4032 are separated by 33 nucleotides HP15_4032 and HP15_4033 are separated by 7 nucleotides HP15_4033 and HP15_4034 overlap by 1 nucleotides
HP15_4030: HP15_4030 - chloroplast-type ferredoxin, at 4,267,104 to 4,267,439
_4030
HP15_4031: HP15_4031 - catechol 2,3-dioxygenase, at 4,267,445 to 4,268,368
_4031
HP15_4032: HP15_4032 - betaine aldehyde dehydrogenase, at 4,268,402 to 4,269,862
_4032
HP15_4033: HP15_4033 - 2-hydroxymuconic semialdehyde hydrolase, at 4,269,870 to 4,270,727
_4033
HP15_4034: HP15_4034 - hydratase/decarboxylase, at 4,270,727 to 4,271,512
_4034
Position (kb)
4268
4269
4270 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.483 kb on - strand at 4267.488 kb on - strand at 4267.498 kb on + strand at 4267.518 kb on + strand at 4267.518 kb on + strand at 4267.531 kb on - strand at 4267.537 kb on + strand at 4267.615 kb on - strand, within HP15_4031 at 4267.642 kb on + strand, within HP15_4031 at 4267.658 kb on - strand, within HP15_4031 at 4267.664 kb on + strand, within HP15_4031 at 4267.768 kb on + strand, within HP15_4031 at 4267.875 kb on - strand, within HP15_4031 at 4267.925 kb on - strand, within HP15_4031 at 4268.014 kb on + strand, within HP15_4031 at 4268.014 kb on + strand, within HP15_4031 at 4268.016 kb on + strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.024 kb on - strand, within HP15_4031 at 4268.183 kb on + strand, within HP15_4031 at 4268.192 kb on - strand, within HP15_4031 at 4268.255 kb on + strand, within HP15_4031 at 4268.263 kb on - strand, within HP15_4031 at 4268.263 kb on - strand, within HP15_4031 at 4268.268 kb on - strand, within HP15_4031 at 4268.268 kb on - strand, within HP15_4031 at 4268.333 kb on + strand at 4268.357 kb on + strand at 4268.357 kb on + strand at 4268.364 kb on + strand at 4268.417 kb on + strand at 4268.441 kb on + strand at 4268.442 kb on - strand at 4268.459 kb on - strand at 4268.489 kb on + strand at 4268.632 kb on - strand, within HP15_4032 at 4268.790 kb on + strand, within HP15_4032 at 4268.814 kb on + strand, within HP15_4032 at 4268.903 kb on + strand, within HP15_4032 at 4268.903 kb on + strand, within HP15_4032 at 4268.903 kb on + strand, within HP15_4032 at 4268.903 kb on + strand, within HP15_4032 at 4268.906 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4268.911 kb on - strand, within HP15_4032 at 4269.006 kb on - strand, within HP15_4032 at 4269.089 kb on - strand, within HP15_4032 at 4269.254 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.280 kb on + strand, within HP15_4032 at 4269.288 kb on - strand, within HP15_4032 at 4269.396 kb on + strand, within HP15_4032 at 4269.404 kb on - strand, within HP15_4032 at 4269.450 kb on + strand, within HP15_4032 at 4269.476 kb on + strand, within HP15_4032 at 4269.484 kb on - strand, within HP15_4032 at 4269.494 kb on + strand, within HP15_4032 at 4269.629 kb on - strand, within HP15_4032 at 4269.639 kb on - strand, within HP15_4032 at 4269.803 kb on + strand at 4269.879 kb on + strand at 4269.885 kb on - strand at 4269.885 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.928 kb on + strand at 4269.928 kb on + strand at 4269.951 kb on - strand at 4269.992 kb on - strand, within HP15_4033 at 4270.032 kb on - strand, within HP15_4033 at 4270.188 kb on + strand, within HP15_4033 at 4270.213 kb on - strand, within HP15_4033 at 4270.259 kb on - strand, within HP15_4033 at 4270.304 kb on + strand, within HP15_4033 at 4270.434 kb on - strand, within HP15_4033 at 4270.477 kb on - strand, within HP15_4033 at 4270.477 kb on - strand, within HP15_4033 at 4270.528 kb on + strand, within HP15_4033 at 4270.704 kb on - strand at 4270.769 kb on - strand at 4270.769 kb on - strand at 4270.853 kb on - strand, within HP15_4034
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,267,475 + -1.1 4,267,475 + +1.5 4,267,475 + -0.1 4,267,475 + +1.0 4,267,483 - -0.8 4,267,488 - -0.2 4,267,498 + -0.9 4,267,518 + -0.4 4,267,518 + +0.9 4,267,531 - -0.1 4,267,537 + -0.7 4,267,615 - HP15_4031 0.18 +1.5 4,267,642 + HP15_4031 0.21 -0.5 4,267,658 - HP15_4031 0.23 -0.3 4,267,664 + HP15_4031 0.24 -0.7 4,267,768 + HP15_4031 0.35 +2.7 4,267,875 - HP15_4031 0.47 -0.5 4,267,925 - HP15_4031 0.52 -0.5 4,268,014 + HP15_4031 0.62 +0.1 4,268,014 + HP15_4031 0.62 +2.4 4,268,016 + HP15_4031 0.62 +0.6 4,268,022 - HP15_4031 0.62 +0.9 4,268,022 - HP15_4031 0.62 -0.9 4,268,022 - HP15_4031 0.62 +0.0 4,268,024 - HP15_4031 0.63 -0.0 4,268,183 + HP15_4031 0.80 -0.4 4,268,192 - HP15_4031 0.81 -0.7 4,268,255 + HP15_4031 0.88 -0.8 4,268,263 - HP15_4031 0.89 +1.8 4,268,263 - HP15_4031 0.89 -0.3 4,268,268 - HP15_4031 0.89 +1.1 4,268,268 - HP15_4031 0.89 -0.2 4,268,333 + +2.0 4,268,357 + -0.3 4,268,357 + -0.3 4,268,364 + -0.9 4,268,417 + -1.5 4,268,441 + -2.3 4,268,442 - -0.9 4,268,459 - -1.0 4,268,489 + -0.1 4,268,632 - HP15_4032 0.16 +0.9 4,268,790 + HP15_4032 0.27 -2.5 4,268,814 + HP15_4032 0.28 -0.6 4,268,903 + HP15_4032 0.34 +0.1 4,268,903 + HP15_4032 0.34 -0.3 4,268,903 + HP15_4032 0.34 -0.2 4,268,903 + HP15_4032 0.34 -0.8 4,268,906 - HP15_4032 0.34 -0.3 4,268,911 - HP15_4032 0.35 -0.2 4,268,911 - HP15_4032 0.35 -0.2 4,268,911 - HP15_4032 0.35 -0.8 4,268,911 - HP15_4032 0.35 -0.9 4,268,911 - HP15_4032 0.35 -0.4 4,268,911 - HP15_4032 0.35 -0.5 4,269,006 - HP15_4032 0.41 -1.1 4,269,089 - HP15_4032 0.47 -1.4 4,269,254 + HP15_4032 0.58 -0.3 4,269,280 + HP15_4032 0.60 +2.2 4,269,280 + HP15_4032 0.60 +1.7 4,269,280 + HP15_4032 0.60 -0.8 4,269,280 + HP15_4032 0.60 -0.4 4,269,280 + HP15_4032 0.60 -0.6 4,269,280 + HP15_4032 0.60 +0.4 4,269,280 + HP15_4032 0.60 +1.7 4,269,288 - HP15_4032 0.61 +1.4 4,269,396 + HP15_4032 0.68 +1.8 4,269,404 - HP15_4032 0.69 -0.0 4,269,450 + HP15_4032 0.72 -0.4 4,269,476 + HP15_4032 0.74 -1.1 4,269,484 - HP15_4032 0.74 +0.8 4,269,494 + HP15_4032 0.75 +3.0 4,269,629 - HP15_4032 0.84 -0.6 4,269,639 - HP15_4032 0.85 -0.5 4,269,803 + +0.2 4,269,879 + -0.8 4,269,885 - +0.0 4,269,885 - -0.2 4,269,887 - -0.8 4,269,887 - -0.6 4,269,887 - -0.3 4,269,887 - -0.2 4,269,887 - -1.1 4,269,928 + +0.1 4,269,928 + +1.6 4,269,951 - -0.5 4,269,992 - HP15_4033 0.14 +2.0 4,270,032 - HP15_4033 0.19 -0.3 4,270,188 + HP15_4033 0.37 +2.4 4,270,213 - HP15_4033 0.40 -0.6 4,270,259 - HP15_4033 0.45 +0.4 4,270,304 + HP15_4033 0.51 -1.1 4,270,434 - HP15_4033 0.66 -1.2 4,270,477 - HP15_4033 0.71 -0.0 4,270,477 - HP15_4033 0.71 -0.4 4,270,528 + HP15_4033 0.77 -0.6 4,270,704 - -0.5 4,270,769 - +1.0 4,270,769 - -0.5 4,270,853 - HP15_4034 0.16 -0.6
Or see this region's nucleotide sequence