Strain Fitness in Marinobacter adhaerens HP15 around HP15_4032

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4030 and HP15_4031 are separated by 5 nucleotidesHP15_4031 and HP15_4032 are separated by 33 nucleotidesHP15_4032 and HP15_4033 are separated by 7 nucleotidesHP15_4033 and HP15_4034 overlap by 1 nucleotides HP15_4030: HP15_4030 - chloroplast-type ferredoxin, at 4,267,104 to 4,267,439 _4030 HP15_4031: HP15_4031 - catechol 2,3-dioxygenase, at 4,267,445 to 4,268,368 _4031 HP15_4032: HP15_4032 - betaine aldehyde dehydrogenase, at 4,268,402 to 4,269,862 _4032 HP15_4033: HP15_4033 - 2-hydroxymuconic semialdehyde hydrolase, at 4,269,870 to 4,270,727 _4033 HP15_4034: HP15_4034 - hydratase/decarboxylase, at 4,270,727 to 4,271,512 _4034 Position (kb) 4268 4269 4270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.483 kb on - strandat 4267.488 kb on - strandat 4267.498 kb on + strandat 4267.518 kb on + strandat 4267.518 kb on + strandat 4267.531 kb on - strandat 4267.537 kb on + strandat 4267.615 kb on - strand, within HP15_4031at 4267.642 kb on + strand, within HP15_4031at 4267.658 kb on - strand, within HP15_4031at 4267.664 kb on + strand, within HP15_4031at 4267.768 kb on + strand, within HP15_4031at 4267.875 kb on - strand, within HP15_4031at 4267.925 kb on - strand, within HP15_4031at 4268.014 kb on + strand, within HP15_4031at 4268.014 kb on + strand, within HP15_4031at 4268.016 kb on + strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.024 kb on - strand, within HP15_4031at 4268.183 kb on + strand, within HP15_4031at 4268.192 kb on - strand, within HP15_4031at 4268.255 kb on + strand, within HP15_4031at 4268.263 kb on - strand, within HP15_4031at 4268.263 kb on - strand, within HP15_4031at 4268.268 kb on - strand, within HP15_4031at 4268.268 kb on - strand, within HP15_4031at 4268.333 kb on + strandat 4268.357 kb on + strandat 4268.357 kb on + strandat 4268.364 kb on + strandat 4268.417 kb on + strandat 4268.441 kb on + strandat 4268.442 kb on - strandat 4268.459 kb on - strandat 4268.489 kb on + strandat 4268.632 kb on - strand, within HP15_4032at 4268.790 kb on + strand, within HP15_4032at 4268.814 kb on + strand, within HP15_4032at 4268.903 kb on + strand, within HP15_4032at 4268.903 kb on + strand, within HP15_4032at 4268.903 kb on + strand, within HP15_4032at 4268.903 kb on + strand, within HP15_4032at 4268.906 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4268.911 kb on - strand, within HP15_4032at 4269.006 kb on - strand, within HP15_4032at 4269.089 kb on - strand, within HP15_4032at 4269.254 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.280 kb on + strand, within HP15_4032at 4269.288 kb on - strand, within HP15_4032at 4269.396 kb on + strand, within HP15_4032at 4269.404 kb on - strand, within HP15_4032at 4269.450 kb on + strand, within HP15_4032at 4269.476 kb on + strand, within HP15_4032at 4269.484 kb on - strand, within HP15_4032at 4269.494 kb on + strand, within HP15_4032at 4269.629 kb on - strand, within HP15_4032at 4269.639 kb on - strand, within HP15_4032at 4269.803 kb on + strandat 4269.879 kb on + strandat 4269.885 kb on - strandat 4269.885 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.928 kb on + strandat 4269.928 kb on + strandat 4269.951 kb on - strandat 4269.992 kb on - strand, within HP15_4033at 4270.032 kb on - strand, within HP15_4033at 4270.188 kb on + strand, within HP15_4033at 4270.213 kb on - strand, within HP15_4033at 4270.259 kb on - strand, within HP15_4033at 4270.304 kb on + strand, within HP15_4033at 4270.434 kb on - strand, within HP15_4033at 4270.477 kb on - strand, within HP15_4033at 4270.477 kb on - strand, within HP15_4033at 4270.528 kb on + strand, within HP15_4033at 4270.704 kb on - strandat 4270.769 kb on - strandat 4270.769 kb on - strandat 4270.853 kb on - strand, within HP15_4034

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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4,267,475 + -1.1
4,267,475 + +1.5
4,267,475 + -0.1
4,267,475 + +1.0
4,267,483 - -0.8
4,267,488 - -0.2
4,267,498 + -0.9
4,267,518 + -0.4
4,267,518 + +0.9
4,267,531 - -0.1
4,267,537 + -0.7
4,267,615 - HP15_4031 0.18 +1.5
4,267,642 + HP15_4031 0.21 -0.5
4,267,658 - HP15_4031 0.23 -0.3
4,267,664 + HP15_4031 0.24 -0.7
4,267,768 + HP15_4031 0.35 +2.7
4,267,875 - HP15_4031 0.47 -0.5
4,267,925 - HP15_4031 0.52 -0.5
4,268,014 + HP15_4031 0.62 +0.1
4,268,014 + HP15_4031 0.62 +2.4
4,268,016 + HP15_4031 0.62 +0.6
4,268,022 - HP15_4031 0.62 +0.9
4,268,022 - HP15_4031 0.62 -0.9
4,268,022 - HP15_4031 0.62 +0.0
4,268,024 - HP15_4031 0.63 -0.0
4,268,183 + HP15_4031 0.80 -0.4
4,268,192 - HP15_4031 0.81 -0.7
4,268,255 + HP15_4031 0.88 -0.8
4,268,263 - HP15_4031 0.89 +1.8
4,268,263 - HP15_4031 0.89 -0.3
4,268,268 - HP15_4031 0.89 +1.1
4,268,268 - HP15_4031 0.89 -0.2
4,268,333 + +2.0
4,268,357 + -0.3
4,268,357 + -0.3
4,268,364 + -0.9
4,268,417 + -1.5
4,268,441 + -2.3
4,268,442 - -0.9
4,268,459 - -1.0
4,268,489 + -0.1
4,268,632 - HP15_4032 0.16 +0.9
4,268,790 + HP15_4032 0.27 -2.5
4,268,814 + HP15_4032 0.28 -0.6
4,268,903 + HP15_4032 0.34 +0.1
4,268,903 + HP15_4032 0.34 -0.3
4,268,903 + HP15_4032 0.34 -0.2
4,268,903 + HP15_4032 0.34 -0.8
4,268,906 - HP15_4032 0.34 -0.3
4,268,911 - HP15_4032 0.35 -0.2
4,268,911 - HP15_4032 0.35 -0.2
4,268,911 - HP15_4032 0.35 -0.8
4,268,911 - HP15_4032 0.35 -0.9
4,268,911 - HP15_4032 0.35 -0.4
4,268,911 - HP15_4032 0.35 -0.5
4,269,006 - HP15_4032 0.41 -1.1
4,269,089 - HP15_4032 0.47 -1.4
4,269,254 + HP15_4032 0.58 -0.3
4,269,280 + HP15_4032 0.60 +2.2
4,269,280 + HP15_4032 0.60 +1.7
4,269,280 + HP15_4032 0.60 -0.8
4,269,280 + HP15_4032 0.60 -0.4
4,269,280 + HP15_4032 0.60 -0.6
4,269,280 + HP15_4032 0.60 +0.4
4,269,280 + HP15_4032 0.60 +1.7
4,269,288 - HP15_4032 0.61 +1.4
4,269,396 + HP15_4032 0.68 +1.8
4,269,404 - HP15_4032 0.69 -0.0
4,269,450 + HP15_4032 0.72 -0.4
4,269,476 + HP15_4032 0.74 -1.1
4,269,484 - HP15_4032 0.74 +0.8
4,269,494 + HP15_4032 0.75 +3.0
4,269,629 - HP15_4032 0.84 -0.6
4,269,639 - HP15_4032 0.85 -0.5
4,269,803 + +0.2
4,269,879 + -0.8
4,269,885 - +0.0
4,269,885 - -0.2
4,269,887 - -0.8
4,269,887 - -0.6
4,269,887 - -0.3
4,269,887 - -0.2
4,269,887 - -1.1
4,269,928 + +0.1
4,269,928 + +1.6
4,269,951 - -0.5
4,269,992 - HP15_4033 0.14 +2.0
4,270,032 - HP15_4033 0.19 -0.3
4,270,188 + HP15_4033 0.37 +2.4
4,270,213 - HP15_4033 0.40 -0.6
4,270,259 - HP15_4033 0.45 +0.4
4,270,304 + HP15_4033 0.51 -1.1
4,270,434 - HP15_4033 0.66 -1.2
4,270,477 - HP15_4033 0.71 -0.0
4,270,477 - HP15_4033 0.71 -0.4
4,270,528 + HP15_4033 0.77 -0.6
4,270,704 - -0.5
4,270,769 - +1.0
4,270,769 - -0.5
4,270,853 - HP15_4034 0.16 -0.6

Or see this region's nucleotide sequence