Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3987 and HP15_3988 are separated by 1 nucleotides HP15_3988 and HP15_3989 are separated by 12 nucleotides
HP15_3987: HP15_3987 - ornithine carbamoyltransferase, at 4,220,103 to 4,221,104
_3987
HP15_3988: HP15_3988 - bacterial carbamate kinase, at 4,221,106 to 4,222,014
_3988
HP15_3989: HP15_3989 - F0F1 ATP synthase subunit beta, at 4,222,027 to 4,223,418
_3989
Position (kb)
4221
4222
4223 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4220.131 kb on + strand at 4220.131 kb on + strand at 4220.137 kb on - strand at 4220.139 kb on - strand at 4220.139 kb on - strand at 4220.139 kb on - strand at 4220.233 kb on - strand, within HP15_3987 at 4220.238 kb on + strand, within HP15_3987 at 4220.250 kb on + strand, within HP15_3987 at 4220.332 kb on + strand, within HP15_3987 at 4220.340 kb on - strand, within HP15_3987 at 4220.340 kb on - strand, within HP15_3987 at 4220.452 kb on + strand, within HP15_3987 at 4220.650 kb on - strand, within HP15_3987 at 4220.893 kb on - strand, within HP15_3987 at 4220.960 kb on - strand, within HP15_3987 at 4220.992 kb on + strand, within HP15_3987 at 4221.076 kb on - strand at 4221.076 kb on - strand at 4221.119 kb on - strand at 4221.134 kb on - strand at 4221.164 kb on + strand at 4221.218 kb on - strand, within HP15_3988 at 4221.236 kb on + strand, within HP15_3988 at 4221.282 kb on - strand, within HP15_3988 at 4221.379 kb on - strand, within HP15_3988 at 4221.443 kb on + strand, within HP15_3988 at 4221.487 kb on + strand, within HP15_3988 at 4221.487 kb on + strand, within HP15_3988 at 4221.495 kb on - strand, within HP15_3988 at 4221.537 kb on - strand, within HP15_3988 at 4221.537 kb on - strand, within HP15_3988 at 4221.578 kb on + strand, within HP15_3988 at 4221.586 kb on - strand, within HP15_3988 at 4221.640 kb on + strand, within HP15_3988 at 4221.640 kb on + strand, within HP15_3988 at 4221.686 kb on - strand, within HP15_3988 at 4221.704 kb on + strand, within HP15_3988 at 4221.712 kb on - strand, within HP15_3988 at 4221.735 kb on - strand, within HP15_3988 at 4221.767 kb on - strand, within HP15_3988 at 4222.083 kb on + strand at 4222.383 kb on + strand, within HP15_3989 at 4222.383 kb on + strand, within HP15_3989 at 4222.391 kb on - strand, within HP15_3989 at 4222.453 kb on - strand, within HP15_3989 at 4222.491 kb on + strand, within HP15_3989 at 4222.499 kb on - strand, within HP15_3989 at 4222.499 kb on - strand, within HP15_3989 at 4222.557 kb on + strand, within HP15_3989 at 4222.694 kb on + strand, within HP15_3989 at 4222.717 kb on + strand, within HP15_3989 at 4222.752 kb on + strand, within HP15_3989 at 4222.795 kb on + strand, within HP15_3989 at 4222.824 kb on + strand, within HP15_3989 at 4222.832 kb on - strand, within HP15_3989 at 4222.846 kb on - strand, within HP15_3989 at 4222.939 kb on + strand, within HP15_3989 at 4222.939 kb on + strand, within HP15_3989 at 4222.941 kb on + strand, within HP15_3989 at 4222.941 kb on + strand, within HP15_3989 at 4222.947 kb on - strand, within HP15_3989 at 4222.959 kb on - strand, within HP15_3989 at 4223.014 kb on - strand, within HP15_3989
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,220,131 + -0.2 4,220,131 + -0.0 4,220,137 - +0.0 4,220,139 - -1.0 4,220,139 - +0.4 4,220,139 - +2.1 4,220,233 - HP15_3987 0.13 -0.4 4,220,238 + HP15_3987 0.13 +0.3 4,220,250 + HP15_3987 0.15 -0.2 4,220,332 + HP15_3987 0.23 -0.3 4,220,340 - HP15_3987 0.24 -1.1 4,220,340 - HP15_3987 0.24 +0.2 4,220,452 + HP15_3987 0.35 -0.2 4,220,650 - HP15_3987 0.55 +2.0 4,220,893 - HP15_3987 0.79 -0.4 4,220,960 - HP15_3987 0.86 +2.3 4,220,992 + HP15_3987 0.89 -0.8 4,221,076 - -0.5 4,221,076 - -0.3 4,221,119 - +2.1 4,221,134 - +0.1 4,221,164 + +0.5 4,221,218 - HP15_3988 0.12 -0.2 4,221,236 + HP15_3988 0.14 -0.8 4,221,282 - HP15_3988 0.19 -0.0 4,221,379 - HP15_3988 0.30 +1.1 4,221,443 + HP15_3988 0.37 +2.5 4,221,487 + HP15_3988 0.42 -1.2 4,221,487 + HP15_3988 0.42 +0.3 4,221,495 - HP15_3988 0.43 -0.4 4,221,537 - HP15_3988 0.47 +0.4 4,221,537 - HP15_3988 0.47 +2.1 4,221,578 + HP15_3988 0.52 +0.8 4,221,586 - HP15_3988 0.53 -1.2 4,221,640 + HP15_3988 0.59 -0.6 4,221,640 + HP15_3988 0.59 -1.3 4,221,686 - HP15_3988 0.64 -0.4 4,221,704 + HP15_3988 0.66 -0.2 4,221,712 - HP15_3988 0.67 -0.5 4,221,735 - HP15_3988 0.69 -1.0 4,221,767 - HP15_3988 0.73 +0.0 4,222,083 + +2.0 4,222,383 + HP15_3989 0.26 -1.4 4,222,383 + HP15_3989 0.26 -0.5 4,222,391 - HP15_3989 0.26 -0.3 4,222,453 - HP15_3989 0.31 +1.9 4,222,491 + HP15_3989 0.33 +0.4 4,222,499 - HP15_3989 0.34 -1.4 4,222,499 - HP15_3989 0.34 -0.2 4,222,557 + HP15_3989 0.38 -0.8 4,222,694 + HP15_3989 0.48 +0.0 4,222,717 + HP15_3989 0.50 +2.1 4,222,752 + HP15_3989 0.52 -0.8 4,222,795 + HP15_3989 0.55 +0.6 4,222,824 + HP15_3989 0.57 +0.1 4,222,832 - HP15_3989 0.58 -0.6 4,222,846 - HP15_3989 0.59 -0.7 4,222,939 + HP15_3989 0.66 +2.0 4,222,939 + HP15_3989 0.66 +0.0 4,222,941 + HP15_3989 0.66 +2.9 4,222,941 + HP15_3989 0.66 +1.0 4,222,947 - HP15_3989 0.66 +2.2 4,222,959 - HP15_3989 0.67 -0.4 4,223,014 - HP15_3989 0.71 -0.3
Or see this region's nucleotide sequence