Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3843 and HP15_3844 are separated by 143 nucleotides HP15_3844 and HP15_3845 are separated by 16 nucleotides HP15_3845 and HP15_3846 are separated by 43 nucleotides HP15_3846 and HP15_3847 overlap by 4 nucleotides HP15_3847 and HP15_3848 overlap by 7 nucleotides
HP15_3843: HP15_3843 - iron(III) ABC transporter, periplasmic iron-compound-binding protein, at 4,069,664 to 4,070,686
_3843
HP15_3844: HP15_3844 - membrane protein containing SNARE associated golgi protein domain, at 4,070,830 to 4,071,522
_3844
HP15_3845: HP15_3845 - ADP-ribosylation/crystallin J1-like protein, at 4,071,539 to 4,072,711
_3845
HP15_3846: HP15_3846 - ethyl tert-butyl ether degradation EthD, at 4,072,755 to 4,073,066
_3846
HP15_3847: HP15_3847 - transmembrane transcriptional regulator (anti-Sigma-factor), at 4,073,063 to 4,073,329
_3847
HP15_3848: HP15_3848 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,073,323 to 4,073,940
_3848
Position (kb)
4071
4072
4073 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4070.726 kb on - strand at 4070.741 kb on - strand at 4070.789 kb on + strand at 4070.803 kb on + strand at 4070.908 kb on - strand, within HP15_3844 at 4070.934 kb on - strand, within HP15_3844 at 4071.037 kb on - strand, within HP15_3844 at 4071.037 kb on - strand, within HP15_3844 at 4071.120 kb on - strand, within HP15_3844 at 4071.228 kb on + strand, within HP15_3844 at 4071.258 kb on - strand, within HP15_3844 at 4071.259 kb on + strand, within HP15_3844 at 4071.264 kb on + strand, within HP15_3844 at 4071.277 kb on - strand, within HP15_3844 at 4071.330 kb on + strand, within HP15_3844 at 4071.352 kb on + strand, within HP15_3844 at 4071.360 kb on - strand, within HP15_3844 at 4071.381 kb on - strand, within HP15_3844 at 4071.386 kb on + strand, within HP15_3844 at 4071.398 kb on + strand, within HP15_3844 at 4071.455 kb on + strand at 4071.463 kb on - strand at 4071.524 kb on - strand at 4071.594 kb on - strand at 4071.605 kb on + strand at 4071.610 kb on + strand at 4071.613 kb on - strand at 4071.613 kb on - strand at 4071.723 kb on + strand, within HP15_3845 at 4071.731 kb on - strand, within HP15_3845 at 4071.736 kb on - strand, within HP15_3845 at 4071.778 kb on + strand, within HP15_3845 at 4071.851 kb on - strand, within HP15_3845 at 4071.909 kb on + strand, within HP15_3845 at 4071.917 kb on - strand, within HP15_3845 at 4072.045 kb on - strand, within HP15_3845 at 4072.058 kb on - strand, within HP15_3845 at 4072.068 kb on - strand, within HP15_3845 at 4072.116 kb on + strand, within HP15_3845 at 4072.226 kb on + strand, within HP15_3845 at 4072.305 kb on + strand, within HP15_3845 at 4072.424 kb on - strand, within HP15_3845 at 4072.542 kb on - strand, within HP15_3845 at 4072.588 kb on + strand, within HP15_3845 at 4072.588 kb on + strand, within HP15_3845 at 4072.607 kb on + strand at 4072.701 kb on + strand at 4072.706 kb on + strand at 4072.781 kb on - strand at 4072.781 kb on - strand at 4072.811 kb on - strand, within HP15_3846 at 4072.889 kb on + strand, within HP15_3846 at 4072.970 kb on + strand, within HP15_3846 at 4073.015 kb on + strand, within HP15_3846 at 4073.183 kb on + strand, within HP15_3847 at 4073.266 kb on - strand, within HP15_3847 at 4073.408 kb on - strand, within HP15_3848 at 4073.408 kb on - strand, within HP15_3848 at 4073.480 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.496 kb on + strand, within HP15_3848 at 4073.506 kb on - strand, within HP15_3848 at 4073.627 kb on + strand, within HP15_3848 at 4073.638 kb on - strand, within HP15_3848 at 4073.666 kb on - strand, within HP15_3848 at 4073.708 kb on - strand, within HP15_3848
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,070,726 - -0.3 4,070,741 - -0.1 4,070,789 + -0.2 4,070,803 + -0.4 4,070,908 - HP15_3844 0.11 +0.4 4,070,934 - HP15_3844 0.15 +2.2 4,071,037 - HP15_3844 0.30 -0.6 4,071,037 - HP15_3844 0.30 -0.2 4,071,120 - HP15_3844 0.42 -0.3 4,071,228 + HP15_3844 0.57 -0.4 4,071,258 - HP15_3844 0.62 +0.6 4,071,259 + HP15_3844 0.62 +4.3 4,071,264 + HP15_3844 0.63 +2.6 4,071,277 - HP15_3844 0.65 -0.7 4,071,330 + HP15_3844 0.72 -0.3 4,071,352 + HP15_3844 0.75 -0.7 4,071,360 - HP15_3844 0.76 -0.7 4,071,381 - HP15_3844 0.80 -0.2 4,071,386 + HP15_3844 0.80 -0.8 4,071,398 + HP15_3844 0.82 -0.8 4,071,455 + -0.0 4,071,463 - -0.4 4,071,524 - +2.2 4,071,594 - -0.0 4,071,605 + +2.7 4,071,610 + +0.3 4,071,613 - +2.8 4,071,613 - -1.1 4,071,723 + HP15_3845 0.16 -0.5 4,071,731 - HP15_3845 0.16 -0.6 4,071,736 - HP15_3845 0.17 -0.7 4,071,778 + HP15_3845 0.20 +0.2 4,071,851 - HP15_3845 0.27 +2.5 4,071,909 + HP15_3845 0.32 -0.0 4,071,917 - HP15_3845 0.32 -1.2 4,072,045 - HP15_3845 0.43 -0.3 4,072,058 - HP15_3845 0.44 -0.1 4,072,068 - HP15_3845 0.45 -1.2 4,072,116 + HP15_3845 0.49 +2.2 4,072,226 + HP15_3845 0.59 -0.1 4,072,305 + HP15_3845 0.65 +2.0 4,072,424 - HP15_3845 0.75 -0.5 4,072,542 - HP15_3845 0.86 +0.0 4,072,588 + HP15_3845 0.89 -1.0 4,072,588 + HP15_3845 0.89 -0.2 4,072,607 + +2.0 4,072,701 + -1.4 4,072,706 + -0.8 4,072,781 - -0.3 4,072,781 - +1.0 4,072,811 - HP15_3846 0.18 -0.2 4,072,889 + HP15_3846 0.43 -2.9 4,072,970 + HP15_3846 0.69 +2.2 4,073,015 + HP15_3846 0.83 +2.3 4,073,183 + HP15_3847 0.45 -0.4 4,073,266 - HP15_3847 0.76 +0.5 4,073,408 - HP15_3848 0.14 +1.1 4,073,408 - HP15_3848 0.14 -0.0 4,073,480 - HP15_3848 0.25 -0.5 4,073,494 - HP15_3848 0.28 +2.8 4,073,494 - HP15_3848 0.28 +2.3 4,073,496 + HP15_3848 0.28 +0.1 4,073,506 - HP15_3848 0.30 +1.9 4,073,627 + HP15_3848 0.49 -0.7 4,073,638 - HP15_3848 0.51 +1.3 4,073,666 - HP15_3848 0.56 -0.5 4,073,708 - HP15_3848 0.62 +1.2
Or see this region's nucleotide sequence