Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3801 and HP15_3802 are separated by 3 nucleotides HP15_3802 and HP15_3803 are separated by 180 nucleotides
HP15_3801: HP15_3801 - sodium/hydrogen exchanger, at 4,026,762 to 4,027,955
_3801
HP15_3802: HP15_3802 - conserved hypothetical protein CHP00011, at 4,027,959 to 4,028,429
_3802
HP15_3803: HP15_3803 - GGDEF domain-like protein, at 4,028,610 to 4,029,839
_3803
Position (kb)
4027
4028
4029 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4027.063 kb on + strand, within HP15_3801 at 4027.073 kb on + strand, within HP15_3801 at 4027.081 kb on - strand, within HP15_3801 at 4027.160 kb on - strand, within HP15_3801 at 4027.232 kb on + strand, within HP15_3801 at 4027.307 kb on + strand, within HP15_3801 at 4027.312 kb on + strand, within HP15_3801 at 4027.312 kb on + strand, within HP15_3801 at 4027.350 kb on + strand, within HP15_3801 at 4027.459 kb on + strand, within HP15_3801 at 4027.534 kb on + strand, within HP15_3801 at 4027.552 kb on - strand, within HP15_3801 at 4027.645 kb on + strand, within HP15_3801 at 4027.688 kb on - strand, within HP15_3801 at 4027.704 kb on + strand, within HP15_3801 at 4027.825 kb on + strand, within HP15_3801 at 4027.856 kb on + strand at 4027.864 kb on - strand at 4027.879 kb on + strand at 4027.921 kb on - strand at 4027.958 kb on - strand at 4028.070 kb on + strand, within HP15_3802 at 4028.070 kb on + strand, within HP15_3802 at 4028.078 kb on - strand, within HP15_3802 at 4028.114 kb on + strand, within HP15_3802 at 4028.138 kb on + strand, within HP15_3802 at 4028.138 kb on + strand, within HP15_3802 at 4028.141 kb on - strand, within HP15_3802 at 4028.312 kb on - strand, within HP15_3802 at 4028.375 kb on + strand, within HP15_3802 at 4028.461 kb on + strand at 4028.469 kb on - strand at 4028.501 kb on - strand at 4028.672 kb on + strand at 4028.679 kb on + strand at 4028.680 kb on - strand at 4028.687 kb on - strand at 4028.687 kb on - strand at 4028.877 kb on - strand, within HP15_3803 at 4028.888 kb on + strand, within HP15_3803 at 4028.981 kb on - strand, within HP15_3803 at 4028.981 kb on - strand, within HP15_3803 at 4029.043 kb on + strand, within HP15_3803 at 4029.103 kb on - strand, within HP15_3803 at 4029.103 kb on - strand, within HP15_3803 at 4029.114 kb on - strand, within HP15_3803 at 4029.139 kb on - strand, within HP15_3803 at 4029.273 kb on - strand, within HP15_3803 at 4029.301 kb on + strand, within HP15_3803 at 4029.302 kb on - strand, within HP15_3803 at 4029.302 kb on - strand, within HP15_3803 at 4029.333 kb on + strand, within HP15_3803 at 4029.353 kb on - strand, within HP15_3803 at 4029.394 kb on - strand, within HP15_3803
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,027,063 + HP15_3801 0.25 -0.4 4,027,073 + HP15_3801 0.26 -0.3 4,027,081 - HP15_3801 0.27 +2.0 4,027,160 - HP15_3801 0.33 +0.2 4,027,232 + HP15_3801 0.39 +1.7 4,027,307 + HP15_3801 0.46 -0.4 4,027,312 + HP15_3801 0.46 +1.4 4,027,312 + HP15_3801 0.46 +0.7 4,027,350 + HP15_3801 0.49 +0.6 4,027,459 + HP15_3801 0.58 -0.5 4,027,534 + HP15_3801 0.65 +2.6 4,027,552 - HP15_3801 0.66 -0.7 4,027,645 + HP15_3801 0.74 -0.3 4,027,688 - HP15_3801 0.78 +2.3 4,027,704 + HP15_3801 0.79 +1.6 4,027,825 + HP15_3801 0.89 +0.7 4,027,856 + +2.4 4,027,864 - -0.0 4,027,879 + +2.2 4,027,921 - +1.9 4,027,958 - -0.5 4,028,070 + HP15_3802 0.24 +2.2 4,028,070 + HP15_3802 0.24 -1.9 4,028,078 - HP15_3802 0.25 -0.6 4,028,114 + HP15_3802 0.33 -0.4 4,028,138 + HP15_3802 0.38 +0.1 4,028,138 + HP15_3802 0.38 +0.0 4,028,141 - HP15_3802 0.39 +1.0 4,028,312 - HP15_3802 0.75 -0.9 4,028,375 + HP15_3802 0.88 -0.9 4,028,461 + +2.1 4,028,469 - +0.1 4,028,501 - +0.1 4,028,672 + +0.7 4,028,679 + -0.7 4,028,680 - -0.7 4,028,687 - -0.4 4,028,687 - -0.8 4,028,877 - HP15_3803 0.22 -0.0 4,028,888 + HP15_3803 0.23 +2.2 4,028,981 - HP15_3803 0.30 -0.2 4,028,981 - HP15_3803 0.30 -1.3 4,029,043 + HP15_3803 0.35 +1.4 4,029,103 - HP15_3803 0.40 +0.3 4,029,103 - HP15_3803 0.40 +2.3 4,029,114 - HP15_3803 0.41 +2.1 4,029,139 - HP15_3803 0.43 -0.6 4,029,273 - HP15_3803 0.54 -1.0 4,029,301 + HP15_3803 0.56 -1.5 4,029,302 - HP15_3803 0.56 +2.7 4,029,302 - HP15_3803 0.56 +0.2 4,029,333 + HP15_3803 0.59 +0.1 4,029,353 - HP15_3803 0.60 +2.0 4,029,394 - HP15_3803 0.64 -0.4
Or see this region's nucleotide sequence