Strain Fitness in Marinobacter adhaerens HP15 around HP15_3793

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3792 and HP15_3793 are separated by 142 nucleotidesHP15_3793 and HP15_3794 are separated by 260 nucleotidesHP15_3794 and HP15_3795 overlap by 26 nucleotides HP15_3792: HP15_3792 - D-(-)-3-hydroxybutyrate oligomer hydrolase precursor, at 4,013,974 to 4,016,151 _3792 HP15_3793: HP15_3793 - protein containing RNA polymerase sigma factor 54, interaction / helix-turn-helix, Fis-type, at 4,016,294 to 4,017,706 _3793 HP15_3794: HP15_3794 - hypothetical protein, at 4,017,967 to 4,018,086 _3794 HP15_3795: HP15_3795 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 4,018,061 to 4,019,086 _3795 Position (kb) 4016 4017 4018Strain fitness (log2 ratio) -1 0 1 2at 4015.324 kb on + strand, within HP15_3792at 4015.343 kb on + strand, within HP15_3792at 4015.396 kb on + strand, within HP15_3792at 4015.402 kb on - strand, within HP15_3792at 4015.429 kb on - strand, within HP15_3792at 4015.529 kb on - strand, within HP15_3792at 4015.544 kb on + strand, within HP15_3792at 4015.571 kb on - strand, within HP15_3792at 4015.606 kb on + strand, within HP15_3792at 4015.626 kb on - strand, within HP15_3792at 4015.647 kb on - strand, within HP15_3792at 4015.703 kb on - strand, within HP15_3792at 4015.707 kb on + strand, within HP15_3792at 4015.747 kb on - strand, within HP15_3792at 4015.828 kb on - strand, within HP15_3792at 4015.828 kb on - strand, within HP15_3792at 4015.830 kb on + strand, within HP15_3792at 4015.911 kb on - strand, within HP15_3792at 4015.974 kb on + strandat 4016.009 kb on - strandat 4016.032 kb on - strandat 4016.075 kb on - strandat 4016.082 kb on + strandat 4016.133 kb on + strandat 4016.141 kb on - strandat 4016.160 kb on - strandat 4016.250 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.298 kb on - strandat 4016.325 kb on - strandat 4016.327 kb on + strandat 4016.340 kb on - strandat 4016.393 kb on + strandat 4016.413 kb on + strandat 4016.524 kb on + strand, within HP15_3793at 4016.548 kb on + strand, within HP15_3793at 4016.561 kb on - strand, within HP15_3793at 4016.645 kb on - strand, within HP15_3793at 4016.800 kb on + strand, within HP15_3793at 4016.879 kb on + strand, within HP15_3793at 4016.903 kb on + strand, within HP15_3793at 4016.903 kb on + strand, within HP15_3793at 4016.911 kb on - strand, within HP15_3793at 4016.926 kb on + strand, within HP15_3793at 4016.965 kb on + strand, within HP15_3793at 4017.263 kb on - strand, within HP15_3793at 4017.316 kb on + strand, within HP15_3793at 4017.319 kb on + strand, within HP15_3793at 4017.350 kb on + strand, within HP15_3793at 4017.350 kb on + strand, within HP15_3793at 4017.395 kb on - strand, within HP15_3793at 4017.459 kb on - strand, within HP15_3793at 4017.506 kb on + strand, within HP15_3793at 4017.588 kb on - strandat 4017.660 kb on + strandat 4017.877 kb on + strandat 4017.894 kb on + strandat 4017.902 kb on - strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.978 kb on - strandat 4017.978 kb on - strandat 4017.978 kb on - strandat 4018.194 kb on - strand, within HP15_3795at 4018.229 kb on - strand, within HP15_3795at 4018.229 kb on - strand, within HP15_3795at 4018.285 kb on + strand, within HP15_3795at 4018.308 kb on - strand, within HP15_3795at 4018.311 kb on + strand, within HP15_3795at 4018.311 kb on + strand, within HP15_3795at 4018.311 kb on + strand, within HP15_3795at 4018.373 kb on - strand, within HP15_3795at 4018.423 kb on + strand, within HP15_3795at 4018.446 kb on + strand, within HP15_3795at 4018.465 kb on + strand, within HP15_3795at 4018.473 kb on + strand, within HP15_3795at 4018.554 kb on - strand, within HP15_3795at 4018.626 kb on + strand, within HP15_3795at 4018.632 kb on - strand, within HP15_3795at 4018.642 kb on - strand, within HP15_3795

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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4,015,324 + HP15_3792 0.62 -0.7
4,015,343 + HP15_3792 0.63 -0.7
4,015,396 + HP15_3792 0.65 -0.8
4,015,402 - HP15_3792 0.66 -1.3
4,015,429 - HP15_3792 0.67 +2.4
4,015,529 - HP15_3792 0.71 -0.5
4,015,544 + HP15_3792 0.72 -0.7
4,015,571 - HP15_3792 0.73 -0.8
4,015,606 + HP15_3792 0.75 -0.3
4,015,626 - HP15_3792 0.76 -0.3
4,015,647 - HP15_3792 0.77 +0.0
4,015,703 - HP15_3792 0.79 -0.9
4,015,707 + HP15_3792 0.80 +2.0
4,015,747 - HP15_3792 0.81 -0.4
4,015,828 - HP15_3792 0.85 +0.6
4,015,828 - HP15_3792 0.85 -0.8
4,015,830 + HP15_3792 0.85 -0.4
4,015,911 - HP15_3792 0.89 +0.8
4,015,974 + -0.4
4,016,009 - +1.0
4,016,032 - -1.1
4,016,075 - -1.4
4,016,082 + +0.2
4,016,133 + +2.1
4,016,141 - -0.2
4,016,160 - -0.1
4,016,250 + +0.7
4,016,290 + -0.4
4,016,290 + +0.6
4,016,290 + -0.1
4,016,290 + -0.5
4,016,290 + +0.6
4,016,290 + -1.3
4,016,298 - +0.0
4,016,325 - -0.5
4,016,327 + -0.5
4,016,340 - -0.5
4,016,393 + +2.0
4,016,413 + +2.0
4,016,524 + HP15_3793 0.16 +0.2
4,016,548 + HP15_3793 0.18 +2.2
4,016,561 - HP15_3793 0.19 +0.1
4,016,645 - HP15_3793 0.25 +0.5
4,016,800 + HP15_3793 0.36 +2.2
4,016,879 + HP15_3793 0.41 -0.6
4,016,903 + HP15_3793 0.43 -0.8
4,016,903 + HP15_3793 0.43 -0.6
4,016,911 - HP15_3793 0.44 +1.5
4,016,926 + HP15_3793 0.45 -0.5
4,016,965 + HP15_3793 0.47 -0.6
4,017,263 - HP15_3793 0.69 -0.6
4,017,316 + HP15_3793 0.72 +0.1
4,017,319 + HP15_3793 0.73 +0.8
4,017,350 + HP15_3793 0.75 -1.1
4,017,350 + HP15_3793 0.75 -1.6
4,017,395 - HP15_3793 0.78 -0.2
4,017,459 - HP15_3793 0.82 -0.8
4,017,506 + HP15_3793 0.86 -0.5
4,017,588 - +0.4
4,017,660 + +2.2
4,017,877 + -0.4
4,017,894 + -0.2
4,017,902 - +2.0
4,017,970 + -0.1
4,017,970 + +2.0
4,017,970 + +1.6
4,017,978 - -0.7
4,017,978 - -0.4
4,017,978 - +0.4
4,018,194 - HP15_3795 0.13 +2.3
4,018,229 - HP15_3795 0.16 -0.9
4,018,229 - HP15_3795 0.16 +2.1
4,018,285 + HP15_3795 0.22 +0.8
4,018,308 - HP15_3795 0.24 -0.5
4,018,311 + HP15_3795 0.24 -0.1
4,018,311 + HP15_3795 0.24 -1.0
4,018,311 + HP15_3795 0.24 -0.6
4,018,373 - HP15_3795 0.30 +0.4
4,018,423 + HP15_3795 0.35 -1.5
4,018,446 + HP15_3795 0.38 -0.2
4,018,465 + HP15_3795 0.39 +0.3
4,018,473 + HP15_3795 0.40 +0.3
4,018,554 - HP15_3795 0.48 -0.4
4,018,626 + HP15_3795 0.55 +2.5
4,018,632 - HP15_3795 0.56 -0.1
4,018,642 - HP15_3795 0.57 -0.9

Or see this region's nucleotide sequence