Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3444 and HP15_3445 are separated by 48 nucleotides HP15_3445 and HP15_3446 overlap by 4 nucleotides HP15_3446 and HP15_3447 are separated by 193 nucleotides HP15_3447 and HP15_3448 are separated by 3 nucleotides
HP15_3444: HP15_3444 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,622,298 to 3,622,996
_3444
HP15_3445: HP15_3445 - sortase family protein, at 3,623,045 to 3,623,635
_3445
HP15_3446: HP15_3446 - protein containing a von Willebrand factor type A (vWA) domain, at 3,623,632 to 3,625,746
_3446
HP15_3447: HP15_3447 - two component transcriptional regulator, winged helix family, at 3,625,940 to 3,626,641
_3447
HP15_3448: HP15_3448 - integral membrane sensor signal transduction histidine kinase, at 3,626,645 to 3,628,675
_3448
Position (kb)
3623
3624
3625
3626 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3622.679 kb on - strand, within HP15_3444 at 3622.689 kb on - strand, within HP15_3444 at 3622.703 kb on - strand, within HP15_3444 at 3622.826 kb on + strand, within HP15_3444 at 3622.836 kb on - strand, within HP15_3444 at 3623.108 kb on + strand, within HP15_3445 at 3623.145 kb on + strand, within HP15_3445 at 3623.146 kb on + strand, within HP15_3445 at 3623.164 kb on + strand, within HP15_3445 at 3623.190 kb on + strand, within HP15_3445 at 3623.195 kb on + strand, within HP15_3445 at 3623.198 kb on - strand, within HP15_3445 at 3623.229 kb on + strand, within HP15_3445 at 3623.246 kb on - strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.299 kb on + strand, within HP15_3445 at 3623.309 kb on + strand, within HP15_3445 at 3623.417 kb on - strand, within HP15_3445 at 3623.430 kb on + strand, within HP15_3445 at 3623.588 kb on + strand at 3623.593 kb on + strand at 3623.727 kb on + strand at 3623.802 kb on + strand at 3623.802 kb on + strand at 3623.810 kb on - strand at 3623.853 kb on - strand, within HP15_3446 at 3623.874 kb on - strand, within HP15_3446 at 3623.897 kb on - strand, within HP15_3446 at 3624.000 kb on + strand, within HP15_3446 at 3624.009 kb on + strand, within HP15_3446 at 3624.331 kb on - strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.431 kb on - strand, within HP15_3446 at 3624.461 kb on + strand, within HP15_3446 at 3624.602 kb on + strand, within HP15_3446 at 3624.603 kb on + strand, within HP15_3446 at 3624.603 kb on + strand, within HP15_3446 at 3624.610 kb on - strand, within HP15_3446 at 3624.631 kb on + strand, within HP15_3446 at 3624.639 kb on - strand, within HP15_3446 at 3624.643 kb on + strand, within HP15_3446 at 3624.681 kb on + strand, within HP15_3446 at 3624.737 kb on - strand, within HP15_3446 at 3624.767 kb on + strand, within HP15_3446 at 3624.769 kb on - strand, within HP15_3446 at 3624.782 kb on + strand, within HP15_3446 at 3624.785 kb on - strand, within HP15_3446 at 3624.814 kb on + strand, within HP15_3446 at 3624.941 kb on - strand, within HP15_3446 at 3625.165 kb on - strand, within HP15_3446 at 3625.172 kb on + strand, within HP15_3446 at 3625.242 kb on + strand, within HP15_3446 at 3625.527 kb on - strand, within HP15_3446 at 3625.625 kb on - strand at 3625.659 kb on + strand at 3625.664 kb on + strand at 3625.667 kb on - strand at 3625.667 kb on - strand at 3625.763 kb on + strand at 3625.763 kb on + strand at 3625.765 kb on + strand at 3625.771 kb on - strand at 3625.781 kb on - strand at 3626.008 kb on - strand at 3626.146 kb on + strand, within HP15_3447 at 3626.304 kb on - strand, within HP15_3447 at 3626.304 kb on - strand, within HP15_3447 at 3626.317 kb on + strand, within HP15_3447 at 3626.443 kb on + strand, within HP15_3447
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 3,622,679 - HP15_3444 0.55 -1.4 3,622,689 - HP15_3444 0.56 -0.5 3,622,703 - HP15_3444 0.58 -0.1 3,622,826 + HP15_3444 0.76 +0.5 3,622,836 - HP15_3444 0.77 -0.8 3,623,108 + HP15_3445 0.11 +0.5 3,623,145 + HP15_3445 0.17 -0.6 3,623,146 + HP15_3445 0.17 -0.8 3,623,164 + HP15_3445 0.20 +0.7 3,623,190 + HP15_3445 0.25 +2.2 3,623,195 + HP15_3445 0.25 -0.1 3,623,198 - HP15_3445 0.26 -0.4 3,623,229 + HP15_3445 0.31 -0.2 3,623,246 - HP15_3445 0.34 +1.2 3,623,259 + HP15_3445 0.36 +0.7 3,623,259 + HP15_3445 0.36 +1.3 3,623,259 + HP15_3445 0.36 +0.1 3,623,259 + HP15_3445 0.36 +0.1 3,623,267 - HP15_3445 0.38 +0.1 3,623,267 - HP15_3445 0.38 +3.2 3,623,299 + HP15_3445 0.43 +0.5 3,623,309 + HP15_3445 0.45 +2.6 3,623,417 - HP15_3445 0.63 -0.8 3,623,430 + HP15_3445 0.65 +0.2 3,623,588 + -1.2 3,623,593 + -0.8 3,623,727 + +2.6 3,623,802 + +0.2 3,623,802 + -1.0 3,623,810 - -1.3 3,623,853 - HP15_3446 0.10 +2.1 3,623,874 - HP15_3446 0.11 +2.1 3,623,897 - HP15_3446 0.13 -0.3 3,624,000 + HP15_3446 0.17 -0.1 3,624,009 + HP15_3446 0.18 -0.5 3,624,331 - HP15_3446 0.33 -0.5 3,624,423 + HP15_3446 0.37 -0.6 3,624,423 + HP15_3446 0.37 +0.3 3,624,423 + HP15_3446 0.37 +1.4 3,624,431 - HP15_3446 0.38 -0.3 3,624,461 + HP15_3446 0.39 -0.6 3,624,602 + HP15_3446 0.46 +2.0 3,624,603 + HP15_3446 0.46 -0.1 3,624,603 + HP15_3446 0.46 +0.0 3,624,610 - HP15_3446 0.46 +0.3 3,624,631 + HP15_3446 0.47 -0.1 3,624,639 - HP15_3446 0.48 -0.2 3,624,643 + HP15_3446 0.48 +2.2 3,624,681 + HP15_3446 0.50 -0.4 3,624,737 - HP15_3446 0.52 -0.3 3,624,767 + HP15_3446 0.54 +0.7 3,624,769 - HP15_3446 0.54 -0.7 3,624,782 + HP15_3446 0.54 -0.6 3,624,785 - HP15_3446 0.55 -0.3 3,624,814 + HP15_3446 0.56 -0.0 3,624,941 - HP15_3446 0.62 -0.8 3,625,165 - HP15_3446 0.72 -0.4 3,625,172 + HP15_3446 0.73 +1.9 3,625,242 + HP15_3446 0.76 +1.6 3,625,527 - HP15_3446 0.90 -0.3 3,625,625 - +1.3 3,625,659 + -0.4 3,625,664 + +0.1 3,625,667 - +0.1 3,625,667 - +0.2 3,625,763 + -1.6 3,625,763 + -0.6 3,625,765 + -0.5 3,625,771 - -0.5 3,625,781 - +0.7 3,626,008 - +2.3 3,626,146 + HP15_3447 0.29 -1.4 3,626,304 - HP15_3447 0.52 -0.3 3,626,304 - HP15_3447 0.52 -0.1 3,626,317 + HP15_3447 0.54 +1.4 3,626,443 + HP15_3447 0.72 -0.9
Or see this region's nucleotide sequence