Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3303 and HP15_3304 overlap by 17 nucleotides HP15_3304 and HP15_3305 overlap by 1 nucleotides HP15_3305 and HP15_3306 overlap by 4 nucleotides
HP15_3303: HP15_3303 - lysophospholipase, at 3,460,989 to 3,461,846
_3303
HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633
_3304
HP15_3305: HP15_3305 - molybdate ABC transporter, inner membrane subunit, at 3,462,633 to 3,463,313
_3305
HP15_3306: HP15_3306 - molybdenum ABC transporter, ATP-binding protein, at 3,463,310 to 3,464,392
_3306
Position (kb)
3462
3463
3464 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3461.783 kb on + strand at 3461.783 kb on + strand at 3461.820 kb on + strand at 3461.950 kb on - strand, within HP15_3304 at 3461.975 kb on + strand, within HP15_3304 at 3462.037 kb on - strand, within HP15_3304 at 3462.095 kb on - strand, within HP15_3304 at 3462.105 kb on + strand, within HP15_3304 at 3462.110 kb on + strand, within HP15_3304 at 3462.113 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.135 kb on + strand, within HP15_3304 at 3462.142 kb on - strand, within HP15_3304 at 3462.154 kb on + strand, within HP15_3304 at 3462.184 kb on - strand, within HP15_3304 at 3462.227 kb on + strand, within HP15_3304 at 3462.245 kb on + strand, within HP15_3304 at 3462.280 kb on + strand, within HP15_3304 at 3462.367 kb on + strand, within HP15_3304 at 3462.458 kb on + strand, within HP15_3304 at 3462.466 kb on - strand, within HP15_3304 at 3462.480 kb on - strand, within HP15_3304 at 3462.516 kb on - strand, within HP15_3304 at 3462.675 kb on - strand at 3462.807 kb on + strand, within HP15_3305 at 3462.814 kb on + strand, within HP15_3305 at 3462.850 kb on + strand, within HP15_3305 at 3462.858 kb on - strand, within HP15_3305 at 3462.867 kb on - strand, within HP15_3305 at 3462.877 kb on + strand, within HP15_3305 at 3463.094 kb on - strand, within HP15_3305 at 3463.133 kb on - strand, within HP15_3305 at 3463.179 kb on + strand, within HP15_3305 at 3463.184 kb on - strand, within HP15_3305 at 3463.234 kb on + strand, within HP15_3305 at 3463.244 kb on + strand, within HP15_3305 at 3463.257 kb on + strand at 3463.364 kb on + strand at 3463.367 kb on - strand at 3463.379 kb on - strand at 3463.430 kb on + strand, within HP15_3306 at 3463.442 kb on + strand, within HP15_3306 at 3463.460 kb on + strand, within HP15_3306 at 3463.460 kb on + strand, within HP15_3306 at 3463.468 kb on - strand, within HP15_3306 at 3463.470 kb on + strand, within HP15_3306 at 3463.671 kb on + strand, within HP15_3306 at 3463.671 kb on + strand, within HP15_3306 at 3463.714 kb on + strand, within HP15_3306 at 3463.722 kb on - strand, within HP15_3306 at 3463.722 kb on - strand, within HP15_3306 at 3463.804 kb on + strand, within HP15_3306 at 3463.807 kb on - strand, within HP15_3306 at 3463.856 kb on + strand, within HP15_3306 at 3463.863 kb on - strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3464.076 kb on - strand, within HP15_3306 at 3464.110 kb on + strand, within HP15_3306 at 3464.163 kb on - strand, within HP15_3306 at 3464.187 kb on + strand, within HP15_3306 at 3464.195 kb on - strand, within HP15_3306 at 3464.302 kb on - strand at 3464.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 3,461,783 + -0.4 3,461,783 + -0.9 3,461,820 + +2.7 3,461,950 - HP15_3304 0.15 +3.0 3,461,975 + HP15_3304 0.18 +2.2 3,462,037 - HP15_3304 0.26 -0.0 3,462,095 - HP15_3304 0.33 -0.1 3,462,105 + HP15_3304 0.34 +0.1 3,462,110 + HP15_3304 0.35 -0.2 3,462,113 - HP15_3304 0.35 +0.2 3,462,118 - HP15_3304 0.36 +0.3 3,462,118 - HP15_3304 0.36 +0.7 3,462,118 - HP15_3304 0.36 +0.0 3,462,118 - HP15_3304 0.36 +0.3 3,462,135 + HP15_3304 0.38 -0.1 3,462,142 - HP15_3304 0.39 -0.9 3,462,154 + HP15_3304 0.40 +2.1 3,462,184 - HP15_3304 0.44 +0.8 3,462,227 + HP15_3304 0.49 +2.9 3,462,245 + HP15_3304 0.52 -0.3 3,462,280 + HP15_3304 0.56 -0.7 3,462,367 + HP15_3304 0.67 -0.8 3,462,458 + HP15_3304 0.78 +2.1 3,462,466 - HP15_3304 0.79 -0.1 3,462,480 - HP15_3304 0.81 +2.5 3,462,516 - HP15_3304 0.85 +2.1 3,462,675 - +2.5 3,462,807 + HP15_3305 0.26 +0.0 3,462,814 + HP15_3305 0.27 +0.0 3,462,850 + HP15_3305 0.32 -0.5 3,462,858 - HP15_3305 0.33 -0.6 3,462,867 - HP15_3305 0.34 +0.5 3,462,877 + HP15_3305 0.36 -1.1 3,463,094 - HP15_3305 0.68 -0.3 3,463,133 - HP15_3305 0.73 -1.7 3,463,179 + HP15_3305 0.80 +2.2 3,463,184 - HP15_3305 0.81 -0.5 3,463,234 + HP15_3305 0.88 -0.4 3,463,244 + HP15_3305 0.90 -0.3 3,463,257 + +0.4 3,463,364 + +2.0 3,463,367 - +1.8 3,463,379 - -0.3 3,463,430 + HP15_3306 0.11 +1.8 3,463,442 + HP15_3306 0.12 +2.3 3,463,460 + HP15_3306 0.14 +0.1 3,463,460 + HP15_3306 0.14 +0.6 3,463,468 - HP15_3306 0.15 -1.0 3,463,470 + HP15_3306 0.15 +0.0 3,463,671 + HP15_3306 0.33 -0.1 3,463,671 + HP15_3306 0.33 +2.7 3,463,714 + HP15_3306 0.37 -0.2 3,463,722 - HP15_3306 0.38 -0.6 3,463,722 - HP15_3306 0.38 -0.8 3,463,804 + HP15_3306 0.46 +0.3 3,463,807 - HP15_3306 0.46 -0.6 3,463,856 + HP15_3306 0.50 +0.5 3,463,863 - HP15_3306 0.51 +2.5 3,463,946 + HP15_3306 0.59 +0.3 3,463,946 + HP15_3306 0.59 +2.4 3,463,946 + HP15_3306 0.59 +0.5 3,463,946 + HP15_3306 0.59 -0.2 3,464,076 - HP15_3306 0.71 +0.8 3,464,110 + HP15_3306 0.74 -0.4 3,464,163 - HP15_3306 0.79 -0.2 3,464,187 + HP15_3306 0.81 -0.1 3,464,195 - HP15_3306 0.82 -0.6 3,464,302 - +0.0 3,464,306 - -0.1
Or see this region's nucleotide sequence