Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3236 and HP15_3237 overlap by 4 nucleotides HP15_3237 and HP15_3238 are separated by 13 nucleotides HP15_3238 and HP15_3239 are separated by 7 nucleotides HP15_3239 and HP15_3240 are separated by 71 nucleotides
HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631
_3236
HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978
_3237
HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381
_3238
HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335
_3239
HP15_3240: HP15_3240 - sulfate permease family protein, at 3,394,407 to 3,396,125
_3240
Position (kb)
3392
3393
3394
3395 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3391.401 kb on + strand, within HP15_3236 at 3391.452 kb on - strand, within HP15_3236 at 3391.493 kb on - strand at 3391.506 kb on - strand at 3391.523 kb on - strand at 3391.556 kb on - strand at 3391.557 kb on - strand at 3391.670 kb on + strand, within HP15_3237 at 3391.774 kb on + strand, within HP15_3237 at 3391.881 kb on + strand, within HP15_3237 at 3391.894 kb on - strand, within HP15_3237 at 3391.923 kb on + strand, within HP15_3237 at 3391.941 kb on - strand, within HP15_3237 at 3391.967 kb on + strand at 3391.987 kb on - strand at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.369 kb on - strand at 3392.409 kb on - strand at 3392.411 kb on - strand at 3392.435 kb on + strand at 3392.757 kb on + strand, within HP15_3239 at 3392.774 kb on - strand, within HP15_3239 at 3392.812 kb on + strand, within HP15_3239 at 3392.859 kb on + strand, within HP15_3239 at 3392.872 kb on - strand, within HP15_3239 at 3392.884 kb on + strand, within HP15_3239 at 3392.893 kb on + strand, within HP15_3239 at 3392.906 kb on - strand, within HP15_3239 at 3392.953 kb on + strand, within HP15_3239 at 3393.209 kb on + strand, within HP15_3239 at 3393.288 kb on + strand, within HP15_3239 at 3393.296 kb on - strand, within HP15_3239 at 3393.296 kb on - strand, within HP15_3239 at 3393.406 kb on - strand, within HP15_3239 at 3393.433 kb on - strand, within HP15_3239 at 3393.460 kb on + strand, within HP15_3239 at 3393.497 kb on + strand, within HP15_3239 at 3393.512 kb on + strand, within HP15_3239 at 3393.518 kb on + strand, within HP15_3239 at 3393.523 kb on + strand, within HP15_3239 at 3393.526 kb on - strand, within HP15_3239 at 3393.585 kb on - strand, within HP15_3239 at 3393.611 kb on + strand, within HP15_3239 at 3393.611 kb on + strand, within HP15_3239 at 3393.611 kb on + strand, within HP15_3239 at 3393.611 kb on + strand, within HP15_3239 at 3393.619 kb on - strand, within HP15_3239 at 3393.729 kb on - strand, within HP15_3239 at 3393.806 kb on + strand, within HP15_3239 at 3393.843 kb on + strand, within HP15_3239 at 3393.936 kb on + strand, within HP15_3239 at 3393.944 kb on - strand, within HP15_3239 at 3393.981 kb on + strand, within HP15_3239 at 3394.131 kb on - strand, within HP15_3239 at 3394.282 kb on - strand at 3394.340 kb on - strand at 3394.438 kb on + strand at 3394.477 kb on + strand at 3394.517 kb on + strand at 3394.567 kb on + strand at 3394.596 kb on - strand, within HP15_3240 at 3394.596 kb on - strand, within HP15_3240 at 3394.752 kb on + strand, within HP15_3240 at 3394.780 kb on + strand, within HP15_3240 at 3394.798 kb on - strand, within HP15_3240 at 3394.877 kb on - strand, within HP15_3240 at 3395.074 kb on + strand, within HP15_3240 at 3395.193 kb on + strand, within HP15_3240 at 3395.193 kb on + strand, within HP15_3240 at 3395.193 kb on + strand, within HP15_3240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 3,391,401 + HP15_3236 0.84 -0.6 3,391,452 - HP15_3236 0.88 +2.0 3,391,493 - +0.5 3,391,506 - -1.1 3,391,523 - -0.4 3,391,556 - +2.2 3,391,557 - +2.0 3,391,670 + HP15_3237 0.12 +2.3 3,391,774 + HP15_3237 0.42 -0.8 3,391,881 + HP15_3237 0.72 -0.5 3,391,894 - HP15_3237 0.76 -0.4 3,391,923 + HP15_3237 0.84 -0.1 3,391,941 - HP15_3237 0.89 +0.1 3,391,967 + -1.1 3,391,987 - -0.1 3,392,076 + HP15_3238 0.22 +2.6 3,392,076 + HP15_3238 0.22 +0.6 3,392,076 + HP15_3238 0.22 +0.0 3,392,369 - -0.4 3,392,409 - +0.1 3,392,411 - +0.2 3,392,435 + +0.4 3,392,757 + HP15_3239 0.19 +0.3 3,392,774 - HP15_3239 0.20 +0.4 3,392,812 + HP15_3239 0.22 -0.6 3,392,859 + HP15_3239 0.24 +0.6 3,392,872 - HP15_3239 0.25 +0.1 3,392,884 + HP15_3239 0.25 -0.7 3,392,893 + HP15_3239 0.26 +1.3 3,392,906 - HP15_3239 0.27 +2.1 3,392,953 + HP15_3239 0.29 -0.2 3,393,209 + HP15_3239 0.42 +0.8 3,393,288 + HP15_3239 0.46 +0.9 3,393,296 - HP15_3239 0.47 +3.2 3,393,296 - HP15_3239 0.47 +2.3 3,393,406 - HP15_3239 0.52 -0.2 3,393,433 - HP15_3239 0.54 -0.4 3,393,460 + HP15_3239 0.55 +2.2 3,393,497 + HP15_3239 0.57 +2.0 3,393,512 + HP15_3239 0.58 +2.3 3,393,518 + HP15_3239 0.58 -0.1 3,393,523 + HP15_3239 0.58 -0.5 3,393,526 - HP15_3239 0.58 +2.0 3,393,585 - HP15_3239 0.61 -0.4 3,393,611 + HP15_3239 0.63 -0.1 3,393,611 + HP15_3239 0.63 -0.9 3,393,611 + HP15_3239 0.63 +0.1 3,393,611 + HP15_3239 0.63 -0.5 3,393,619 - HP15_3239 0.63 -0.1 3,393,729 - HP15_3239 0.69 -0.6 3,393,806 + HP15_3239 0.73 -0.4 3,393,843 + HP15_3239 0.75 -0.4 3,393,936 + HP15_3239 0.79 +2.3 3,393,944 - HP15_3239 0.80 -0.0 3,393,981 + HP15_3239 0.82 +2.2 3,394,131 - HP15_3239 0.89 +2.6 3,394,282 - -0.8 3,394,340 - +1.1 3,394,438 + +2.3 3,394,477 + -0.0 3,394,517 + -0.4 3,394,567 + +1.5 3,394,596 - HP15_3240 0.11 -0.5 3,394,596 - HP15_3240 0.11 +0.0 3,394,752 + HP15_3240 0.20 -0.1 3,394,780 + HP15_3240 0.22 +0.5 3,394,798 - HP15_3240 0.23 -3.2 3,394,877 - HP15_3240 0.27 -0.2 3,395,074 + HP15_3240 0.39 +0.8 3,395,193 + HP15_3240 0.46 +1.9 3,395,193 + HP15_3240 0.46 -0.7 3,395,193 + HP15_3240 0.46 +0.4
Or see this region's nucleotide sequence