Strain Fitness in Marinobacter adhaerens HP15 around HP15_3239

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3236 and HP15_3237 overlap by 4 nucleotidesHP15_3237 and HP15_3238 are separated by 13 nucleotidesHP15_3238 and HP15_3239 are separated by 7 nucleotidesHP15_3239 and HP15_3240 are separated by 71 nucleotides HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631 _3236 HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978 _3237 HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381 _3238 HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335 _3239 HP15_3240: HP15_3240 - sulfate permease family protein, at 3,394,407 to 3,396,125 _3240 Position (kb) 3392 3393 3394 3395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3391.401 kb on + strand, within HP15_3236at 3391.452 kb on - strand, within HP15_3236at 3391.493 kb on - strandat 3391.506 kb on - strandat 3391.523 kb on - strandat 3391.556 kb on - strandat 3391.557 kb on - strandat 3391.670 kb on + strand, within HP15_3237at 3391.774 kb on + strand, within HP15_3237at 3391.881 kb on + strand, within HP15_3237at 3391.894 kb on - strand, within HP15_3237at 3391.923 kb on + strand, within HP15_3237at 3391.941 kb on - strand, within HP15_3237at 3391.967 kb on + strandat 3391.987 kb on - strandat 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.369 kb on - strandat 3392.409 kb on - strandat 3392.411 kb on - strandat 3392.435 kb on + strandat 3392.757 kb on + strand, within HP15_3239at 3392.774 kb on - strand, within HP15_3239at 3392.812 kb on + strand, within HP15_3239at 3392.859 kb on + strand, within HP15_3239at 3392.872 kb on - strand, within HP15_3239at 3392.884 kb on + strand, within HP15_3239at 3392.893 kb on + strand, within HP15_3239at 3392.906 kb on - strand, within HP15_3239at 3392.953 kb on + strand, within HP15_3239at 3393.209 kb on + strand, within HP15_3239at 3393.288 kb on + strand, within HP15_3239at 3393.296 kb on - strand, within HP15_3239at 3393.296 kb on - strand, within HP15_3239at 3393.406 kb on - strand, within HP15_3239at 3393.433 kb on - strand, within HP15_3239at 3393.460 kb on + strand, within HP15_3239at 3393.497 kb on + strand, within HP15_3239at 3393.512 kb on + strand, within HP15_3239at 3393.518 kb on + strand, within HP15_3239at 3393.523 kb on + strand, within HP15_3239at 3393.526 kb on - strand, within HP15_3239at 3393.585 kb on - strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.619 kb on - strand, within HP15_3239at 3393.729 kb on - strand, within HP15_3239at 3393.806 kb on + strand, within HP15_3239at 3393.843 kb on + strand, within HP15_3239at 3393.936 kb on + strand, within HP15_3239at 3393.944 kb on - strand, within HP15_3239at 3393.981 kb on + strand, within HP15_3239at 3394.131 kb on - strand, within HP15_3239at 3394.282 kb on - strandat 3394.340 kb on - strandat 3394.438 kb on + strandat 3394.477 kb on + strandat 3394.517 kb on + strandat 3394.567 kb on + strandat 3394.596 kb on - strand, within HP15_3240at 3394.596 kb on - strand, within HP15_3240at 3394.752 kb on + strand, within HP15_3240at 3394.780 kb on + strand, within HP15_3240at 3394.798 kb on - strand, within HP15_3240at 3394.877 kb on - strand, within HP15_3240at 3395.074 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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3,391,401 + HP15_3236 0.84 -0.6
3,391,452 - HP15_3236 0.88 +2.0
3,391,493 - +0.5
3,391,506 - -1.1
3,391,523 - -0.4
3,391,556 - +2.2
3,391,557 - +2.0
3,391,670 + HP15_3237 0.12 +2.3
3,391,774 + HP15_3237 0.42 -0.8
3,391,881 + HP15_3237 0.72 -0.5
3,391,894 - HP15_3237 0.76 -0.4
3,391,923 + HP15_3237 0.84 -0.1
3,391,941 - HP15_3237 0.89 +0.1
3,391,967 + -1.1
3,391,987 - -0.1
3,392,076 + HP15_3238 0.22 +2.6
3,392,076 + HP15_3238 0.22 +0.6
3,392,076 + HP15_3238 0.22 +0.0
3,392,369 - -0.4
3,392,409 - +0.1
3,392,411 - +0.2
3,392,435 + +0.4
3,392,757 + HP15_3239 0.19 +0.3
3,392,774 - HP15_3239 0.20 +0.4
3,392,812 + HP15_3239 0.22 -0.6
3,392,859 + HP15_3239 0.24 +0.6
3,392,872 - HP15_3239 0.25 +0.1
3,392,884 + HP15_3239 0.25 -0.7
3,392,893 + HP15_3239 0.26 +1.3
3,392,906 - HP15_3239 0.27 +2.1
3,392,953 + HP15_3239 0.29 -0.2
3,393,209 + HP15_3239 0.42 +0.8
3,393,288 + HP15_3239 0.46 +0.9
3,393,296 - HP15_3239 0.47 +3.2
3,393,296 - HP15_3239 0.47 +2.3
3,393,406 - HP15_3239 0.52 -0.2
3,393,433 - HP15_3239 0.54 -0.4
3,393,460 + HP15_3239 0.55 +2.2
3,393,497 + HP15_3239 0.57 +2.0
3,393,512 + HP15_3239 0.58 +2.3
3,393,518 + HP15_3239 0.58 -0.1
3,393,523 + HP15_3239 0.58 -0.5
3,393,526 - HP15_3239 0.58 +2.0
3,393,585 - HP15_3239 0.61 -0.4
3,393,611 + HP15_3239 0.63 -0.1
3,393,611 + HP15_3239 0.63 -0.9
3,393,611 + HP15_3239 0.63 +0.1
3,393,611 + HP15_3239 0.63 -0.5
3,393,619 - HP15_3239 0.63 -0.1
3,393,729 - HP15_3239 0.69 -0.6
3,393,806 + HP15_3239 0.73 -0.4
3,393,843 + HP15_3239 0.75 -0.4
3,393,936 + HP15_3239 0.79 +2.3
3,393,944 - HP15_3239 0.80 -0.0
3,393,981 + HP15_3239 0.82 +2.2
3,394,131 - HP15_3239 0.89 +2.6
3,394,282 - -0.8
3,394,340 - +1.1
3,394,438 + +2.3
3,394,477 + -0.0
3,394,517 + -0.4
3,394,567 + +1.5
3,394,596 - HP15_3240 0.11 -0.5
3,394,596 - HP15_3240 0.11 +0.0
3,394,752 + HP15_3240 0.20 -0.1
3,394,780 + HP15_3240 0.22 +0.5
3,394,798 - HP15_3240 0.23 -3.2
3,394,877 - HP15_3240 0.27 -0.2
3,395,074 + HP15_3240 0.39 +0.8
3,395,193 + HP15_3240 0.46 +1.9
3,395,193 + HP15_3240 0.46 -0.7
3,395,193 + HP15_3240 0.46 +0.4

Or see this region's nucleotide sequence