Strain Fitness in Marinobacter adhaerens HP15 around HP15_3153

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3151 and HP15_3152 overlap by 18 nucleotidesHP15_3152 and HP15_3153 are separated by 94 nucleotidesHP15_3153 and HP15_3154 are separated by 130 nucleotidesHP15_3154 and HP15_3155 are separated by 18 nucleotides HP15_3151: HP15_3151 - transcriptional regulator, TetR family, at 3,304,920 to 3,305,531 _3151 HP15_3152: HP15_3152 - regulatory protein ada, at 3,305,514 to 3,306,404 _3152 HP15_3153: HP15_3153 - protein containing cyclic nucleotide-binding domain, at 3,306,499 to 3,307,197 _3153 HP15_3154: HP15_3154 - class II aldolase/adducin family protein, at 3,307,328 to 3,308,098 _3154 HP15_3155: HP15_3155 - metal dependent phosphohydrolase, at 3,308,117 to 3,308,713 _3155 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3305.511 kb on - strandat 3305.599 kb on + strandat 3305.601 kb on + strandat 3305.674 kb on + strand, within HP15_3152at 3305.674 kb on + strand, within HP15_3152at 3305.674 kb on + strand, within HP15_3152at 3305.674 kb on + strand, within HP15_3152at 3305.674 kb on + strand, within HP15_3152at 3305.679 kb on + strand, within HP15_3152at 3305.682 kb on - strand, within HP15_3152at 3305.682 kb on - strand, within HP15_3152at 3305.682 kb on - strand, within HP15_3152at 3305.687 kb on - strand, within HP15_3152at 3305.705 kb on + strand, within HP15_3152at 3305.707 kb on + strand, within HP15_3152at 3305.815 kb on + strand, within HP15_3152at 3305.858 kb on + strand, within HP15_3152at 3305.866 kb on + strand, within HP15_3152at 3306.027 kb on + strand, within HP15_3152at 3306.045 kb on - strand, within HP15_3152at 3306.118 kb on - strand, within HP15_3152at 3306.153 kb on + strand, within HP15_3152at 3306.154 kb on + strand, within HP15_3152at 3306.167 kb on + strand, within HP15_3152at 3306.182 kb on + strand, within HP15_3152at 3306.228 kb on + strand, within HP15_3152at 3306.597 kb on + strand, within HP15_3153at 3306.607 kb on + strand, within HP15_3153at 3306.607 kb on + strand, within HP15_3153at 3306.704 kb on - strand, within HP15_3153at 3306.808 kb on + strand, within HP15_3153at 3306.808 kb on + strand, within HP15_3153at 3306.826 kb on + strand, within HP15_3153at 3306.885 kb on + strand, within HP15_3153at 3306.922 kb on - strand, within HP15_3153at 3306.973 kb on + strand, within HP15_3153at 3307.002 kb on + strand, within HP15_3153at 3307.044 kb on + strand, within HP15_3153at 3307.052 kb on - strand, within HP15_3153at 3307.061 kb on - strand, within HP15_3153at 3307.201 kb on - strandat 3307.276 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.324 kb on - strandat 3307.330 kb on + strandat 3307.376 kb on + strandat 3307.419 kb on + strand, within HP15_3154at 3307.479 kb on - strand, within HP15_3154at 3307.535 kb on + strand, within HP15_3154at 3307.559 kb on - strand, within HP15_3154at 3307.581 kb on - strand, within HP15_3154at 3307.661 kb on + strand, within HP15_3154at 3307.692 kb on + strand, within HP15_3154at 3307.717 kb on + strand, within HP15_3154at 3307.724 kb on + strand, within HP15_3154at 3307.725 kb on - strand, within HP15_3154at 3307.928 kb on + strand, within HP15_3154at 3307.936 kb on - strand, within HP15_3154at 3308.023 kb on + strandat 3308.023 kb on + strandat 3308.032 kb on - strandat 3308.171 kb on + strandat 3308.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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3,305,511 - +0.1
3,305,599 + +1.3
3,305,601 + -0.7
3,305,674 + HP15_3152 0.18 -0.4
3,305,674 + HP15_3152 0.18 +1.8
3,305,674 + HP15_3152 0.18 -0.2
3,305,674 + HP15_3152 0.18 -0.4
3,305,674 + HP15_3152 0.18 -0.4
3,305,679 + HP15_3152 0.19 +2.1
3,305,682 - HP15_3152 0.19 -0.8
3,305,682 - HP15_3152 0.19 -0.9
3,305,682 - HP15_3152 0.19 -0.6
3,305,687 - HP15_3152 0.19 -0.6
3,305,705 + HP15_3152 0.21 -0.6
3,305,707 + HP15_3152 0.22 +0.4
3,305,815 + HP15_3152 0.34 -1.3
3,305,858 + HP15_3152 0.39 -0.1
3,305,866 + HP15_3152 0.40 -0.7
3,306,027 + HP15_3152 0.58 -0.0
3,306,045 - HP15_3152 0.60 +0.8
3,306,118 - HP15_3152 0.68 +2.1
3,306,153 + HP15_3152 0.72 +1.5
3,306,154 + HP15_3152 0.72 -0.7
3,306,167 + HP15_3152 0.73 +2.3
3,306,182 + HP15_3152 0.75 -0.3
3,306,228 + HP15_3152 0.80 -1.1
3,306,597 + HP15_3153 0.14 -1.2
3,306,607 + HP15_3153 0.15 +0.9
3,306,607 + HP15_3153 0.15 -0.4
3,306,704 - HP15_3153 0.29 +2.6
3,306,808 + HP15_3153 0.44 +1.6
3,306,808 + HP15_3153 0.44 -1.9
3,306,826 + HP15_3153 0.47 +1.2
3,306,885 + HP15_3153 0.55 -0.7
3,306,922 - HP15_3153 0.61 -1.1
3,306,973 + HP15_3153 0.68 -0.7
3,307,002 + HP15_3153 0.72 +3.2
3,307,044 + HP15_3153 0.78 -0.4
3,307,052 - HP15_3153 0.79 +0.1
3,307,061 - HP15_3153 0.80 -0.3
3,307,201 - -0.6
3,307,276 + -0.1
3,307,311 + +2.2
3,307,311 + +1.4
3,307,311 + -0.2
3,307,311 + -0.3
3,307,319 - -1.0
3,307,319 - +1.8
3,307,319 - -0.3
3,307,319 - -0.3
3,307,319 - +1.2
3,307,319 - +2.0
3,307,319 - +0.2
3,307,319 - -0.6
3,307,319 - -1.1
3,307,324 - -0.7
3,307,330 + +1.9
3,307,376 + +0.1
3,307,419 + HP15_3154 0.12 -0.8
3,307,479 - HP15_3154 0.20 +0.7
3,307,535 + HP15_3154 0.27 -0.6
3,307,559 - HP15_3154 0.30 +2.3
3,307,581 - HP15_3154 0.33 -0.9
3,307,661 + HP15_3154 0.43 -0.6
3,307,692 + HP15_3154 0.47 +1.8
3,307,717 + HP15_3154 0.50 +0.1
3,307,724 + HP15_3154 0.51 -0.7
3,307,725 - HP15_3154 0.51 -0.0
3,307,928 + HP15_3154 0.78 -1.8
3,307,936 - HP15_3154 0.79 -0.4
3,308,023 + +0.4
3,308,023 + +2.3
3,308,032 - -0.5
3,308,171 + +2.1
3,308,171 + -0.3

Or see this region's nucleotide sequence