Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3095 and HP15_3096 are separated by 18 nucleotides HP15_3096 and HP15_3097 are separated by 2 nucleotides
HP15_3095: HP15_3095 - phage-related membrane protein, at 3,251,087 to 3,252,250
_3095
HP15_3096: HP15_3096 - membrane protein, at 3,252,269 to 3,252,532
_3096
HP15_3097: HP15_3097 - hypothetical protein, at 3,252,535 to 3,253,833
_3097
Position (kb)
3252
3253 Strain fitness (log2 ratio)
-1
0
1
2 at 3251.382 kb on + strand, within HP15_3095 at 3251.522 kb on + strand, within HP15_3095 at 3251.529 kb on - strand, within HP15_3095 at 3251.564 kb on - strand, within HP15_3095 at 3251.658 kb on + strand, within HP15_3095 at 3251.770 kb on - strand, within HP15_3095 at 3251.858 kb on + strand, within HP15_3095 at 3251.919 kb on - strand, within HP15_3095 at 3252.101 kb on - strand, within HP15_3095 at 3252.103 kb on + strand, within HP15_3095 at 3252.111 kb on - strand, within HP15_3095 at 3252.201 kb on + strand at 3252.226 kb on + strand at 3252.234 kb on - strand at 3252.363 kb on + strand, within HP15_3096 at 3252.373 kb on + strand, within HP15_3096 at 3252.397 kb on + strand, within HP15_3096 at 3252.534 kb on + strand at 3252.568 kb on + strand at 3252.673 kb on + strand, within HP15_3097 at 3252.687 kb on - strand, within HP15_3097 at 3252.716 kb on - strand, within HP15_3097 at 3252.746 kb on - strand, within HP15_3097 at 3252.792 kb on - strand, within HP15_3097 at 3252.792 kb on - strand, within HP15_3097 at 3252.810 kb on - strand, within HP15_3097 at 3252.812 kb on - strand, within HP15_3097 at 3252.898 kb on + strand, within HP15_3097 at 3252.913 kb on - strand, within HP15_3097 at 3252.953 kb on - strand, within HP15_3097 at 3253.008 kb on + strand, within HP15_3097 at 3253.046 kb on + strand, within HP15_3097 at 3253.069 kb on - strand, within HP15_3097 at 3253.122 kb on - strand, within HP15_3097 at 3253.240 kb on + strand, within HP15_3097 at 3253.285 kb on + strand, within HP15_3097 at 3253.293 kb on - strand, within HP15_3097 at 3253.362 kb on - strand, within HP15_3097 at 3253.395 kb on - strand, within HP15_3097 at 3253.401 kb on - strand, within HP15_3097 at 3253.441 kb on + strand, within HP15_3097 at 3253.493 kb on - strand, within HP15_3097
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 3,251,382 + HP15_3095 0.25 +1.8 3,251,522 + HP15_3095 0.37 +2.1 3,251,529 - HP15_3095 0.38 +0.1 3,251,564 - HP15_3095 0.41 -0.1 3,251,658 + HP15_3095 0.49 +2.0 3,251,770 - HP15_3095 0.59 +2.2 3,251,858 + HP15_3095 0.66 +2.4 3,251,919 - HP15_3095 0.71 +1.7 3,252,101 - HP15_3095 0.87 +0.2 3,252,103 + HP15_3095 0.87 -0.6 3,252,111 - HP15_3095 0.88 +1.9 3,252,201 + -0.2 3,252,226 + +0.9 3,252,234 - -1.4 3,252,363 + HP15_3096 0.36 -0.6 3,252,373 + HP15_3096 0.39 -0.7 3,252,397 + HP15_3096 0.48 -0.5 3,252,534 + +0.3 3,252,568 + -0.2 3,252,673 + HP15_3097 0.11 -0.1 3,252,687 - HP15_3097 0.12 -0.3 3,252,716 - HP15_3097 0.14 -0.2 3,252,746 - HP15_3097 0.16 +1.7 3,252,792 - HP15_3097 0.20 +0.3 3,252,792 - HP15_3097 0.20 -0.3 3,252,810 - HP15_3097 0.21 +2.2 3,252,812 - HP15_3097 0.21 +2.0 3,252,898 + HP15_3097 0.28 -0.4 3,252,913 - HP15_3097 0.29 +1.0 3,252,953 - HP15_3097 0.32 +1.9 3,253,008 + HP15_3097 0.36 -0.5 3,253,046 + HP15_3097 0.39 +0.1 3,253,069 - HP15_3097 0.41 -0.2 3,253,122 - HP15_3097 0.45 -0.5 3,253,240 + HP15_3097 0.54 +2.5 3,253,285 + HP15_3097 0.58 +1.8 3,253,293 - HP15_3097 0.58 -0.8 3,253,362 - HP15_3097 0.64 -0.4 3,253,395 - HP15_3097 0.66 -0.1 3,253,401 - HP15_3097 0.67 +2.2 3,253,441 + HP15_3097 0.70 -0.4 3,253,493 - HP15_3097 0.74 -0.5
Or see this region's nucleotide sequence