Strain Fitness in Marinobacter adhaerens HP15 around HP15_3062

Experiment: D-Glucosamine Hydrochloride as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3061 and HP15_3062 are separated by 86 nucleotidesHP15_3062 and HP15_3063 are separated by 192 nucleotides HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367 _3061 HP15_3062: HP15_3062 - lipoprotein, at 3,213,454 to 3,214,215 _3062 HP15_3063: HP15_3063 - polynucleotide phosphorylase/polyadenylase, at 3,214,408 to 3,216,591 _3063 Position (kb) 3213 3214 3215Strain fitness (log2 ratio) -2 -1 0 1 2at 3212.464 kb on - strand, within HP15_3061at 3212.596 kb on - strand, within HP15_3061at 3212.630 kb on + strand, within HP15_3061at 3212.633 kb on - strand, within HP15_3061at 3212.671 kb on + strand, within HP15_3061at 3212.713 kb on - strand, within HP15_3061at 3212.959 kb on + strand, within HP15_3061at 3213.024 kb on + strand, within HP15_3061at 3213.118 kb on + strand, within HP15_3061at 3213.127 kb on + strand, within HP15_3061at 3213.140 kb on - strand, within HP15_3061at 3213.238 kb on + strandat 3213.244 kb on + strandat 3213.506 kb on - strandat 3213.722 kb on - strand, within HP15_3062at 3213.722 kb on - strand, within HP15_3062at 3213.832 kb on + strand, within HP15_3062at 3213.867 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3214.033 kb on + strand, within HP15_3062at 3214.098 kb on + strand, within HP15_3062at 3214.106 kb on - strand, within HP15_3062at 3214.178 kb on + strandat 3214.207 kb on + strandat 3214.217 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
remove
3,212,464 - HP15_3061 0.52 +0.4
3,212,596 - HP15_3061 0.59 +0.3
3,212,630 + HP15_3061 0.61 -0.1
3,212,633 - HP15_3061 0.61 -0.2
3,212,671 + HP15_3061 0.63 -0.2
3,212,713 - HP15_3061 0.65 +2.3
3,212,959 + HP15_3061 0.78 +1.1
3,213,024 + HP15_3061 0.82 +2.2
3,213,118 + HP15_3061 0.87 +2.7
3,213,127 + HP15_3061 0.87 -1.9
3,213,140 - HP15_3061 0.88 -0.9
3,213,238 + -1.3
3,213,244 + +1.9
3,213,506 - +1.0
3,213,722 - HP15_3062 0.35 +2.2
3,213,722 - HP15_3062 0.35 +1.7
3,213,832 + HP15_3062 0.50 -1.5
3,213,867 + HP15_3062 0.54 -0.2
3,213,881 + HP15_3062 0.56 -1.5
3,213,881 + HP15_3062 0.56 -0.1
3,213,881 + HP15_3062 0.56 +2.1
3,213,889 - HP15_3062 0.57 -1.4
3,213,889 - HP15_3062 0.57 -0.6
3,213,889 - HP15_3062 0.57 -1.4
3,213,889 - HP15_3062 0.57 +2.5
3,214,033 + HP15_3062 0.76 +2.3
3,214,098 + HP15_3062 0.85 +2.2
3,214,106 - HP15_3062 0.86 -0.6
3,214,178 + +0.6
3,214,207 + -0.5
3,214,217 + -1.4

Or see this region's nucleotide sequence