Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_307 and HP15_308 are separated by 76 nucleotides HP15_308 and HP15_309 are separated by 8 nucleotides
HP15_307: HP15_307 - NAD-dependent epimerase/dehydratase, at 297,629 to 298,495
_307
HP15_308: HP15_308 - oxidative stress regulatory protein OxyR, at 298,572 to 299,531
_308
HP15_309: HP15_309 - DNA helicase, ATP-dependent, RecG, at 299,540 to 301,615
_309
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1
2
3 at 297.627 kb on + strand at 297.698 kb on + strand at 297.805 kb on + strand, within HP15_307 at 297.813 kb on - strand, within HP15_307 at 297.845 kb on + strand, within HP15_307 at 297.850 kb on + strand, within HP15_307 at 297.906 kb on - strand, within HP15_307 at 297.908 kb on + strand, within HP15_307 at 297.934 kb on + strand, within HP15_307 at 297.964 kb on + strand, within HP15_307 at 298.080 kb on + strand, within HP15_307 at 298.221 kb on + strand, within HP15_307 at 298.231 kb on - strand, within HP15_307 at 298.241 kb on + strand, within HP15_307 at 298.256 kb on + strand, within HP15_307 at 298.304 kb on - strand, within HP15_307 at 298.333 kb on + strand, within HP15_307 at 298.479 kb on - strand at 298.571 kb on - strand at 298.576 kb on - strand at 298.576 kb on - strand at 298.677 kb on - strand, within HP15_308 at 298.810 kb on - strand, within HP15_308 at 298.811 kb on - strand, within HP15_308 at 298.870 kb on - strand, within HP15_308 at 298.890 kb on - strand, within HP15_308 at 298.949 kb on + strand, within HP15_308 at 298.957 kb on - strand, within HP15_308 at 299.173 kb on - strand, within HP15_308 at 299.301 kb on - strand, within HP15_308 at 299.401 kb on - strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.506 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.580 kb on - strand at 299.580 kb on - strand at 299.644 kb on + strand at 299.841 kb on + strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.947 kb on + strand, within HP15_309 at 299.963 kb on + strand, within HP15_309 at 299.972 kb on + strand, within HP15_309 at 299.980 kb on - strand, within HP15_309 at 300.051 kb on + strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.175 kb on + strand, within HP15_309 at 300.231 kb on + strand, within HP15_309 at 300.246 kb on + strand, within HP15_309 at 300.254 kb on - strand, within HP15_309 at 300.304 kb on + strand, within HP15_309 at 300.405 kb on - strand, within HP15_309 at 300.427 kb on - strand, within HP15_309
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 297,627 + -0.2 297,698 + -1.2 297,805 + HP15_307 0.20 -0.4 297,813 - HP15_307 0.21 -1.6 297,845 + HP15_307 0.25 -0.1 297,850 + HP15_307 0.25 -0.7 297,906 - HP15_307 0.32 +1.8 297,908 + HP15_307 0.32 -1.5 297,934 + HP15_307 0.35 -0.5 297,964 + HP15_307 0.39 -0.6 298,080 + HP15_307 0.52 -0.8 298,221 + HP15_307 0.68 -0.6 298,231 - HP15_307 0.69 +2.8 298,241 + HP15_307 0.71 +1.3 298,256 + HP15_307 0.72 -0.9 298,304 - HP15_307 0.78 -0.6 298,333 + HP15_307 0.81 -0.3 298,479 - +1.8 298,571 - -0.4 298,576 - -0.9 298,576 - -0.9 298,677 - HP15_308 0.11 +0.6 298,810 - HP15_308 0.25 -0.7 298,811 - HP15_308 0.25 +0.5 298,870 - HP15_308 0.31 -0.2 298,890 - HP15_308 0.33 -1.3 298,949 + HP15_308 0.39 -0.9 298,957 - HP15_308 0.40 -1.4 299,173 - HP15_308 0.63 -0.3 299,301 - HP15_308 0.76 +0.9 299,401 - HP15_308 0.86 -0.2 299,435 + HP15_308 0.90 +2.0 299,435 + HP15_308 0.90 -0.3 299,506 + -0.7 299,572 + -0.3 299,572 + -0.9 299,572 + -0.4 299,580 - +1.6 299,580 - -1.0 299,644 + -0.3 299,841 + HP15_309 0.14 -0.4 299,914 - HP15_309 0.18 +0.4 299,914 - HP15_309 0.18 -0.5 299,947 + HP15_309 0.20 -0.3 299,963 + HP15_309 0.20 -0.6 299,972 + HP15_309 0.21 -0.7 299,980 - HP15_309 0.21 -1.6 300,051 + HP15_309 0.25 -1.5 300,059 - HP15_309 0.25 -1.4 300,059 - HP15_309 0.25 +1.8 300,175 + HP15_309 0.31 +0.5 300,231 + HP15_309 0.33 -0.3 300,246 + HP15_309 0.34 -0.6 300,254 - HP15_309 0.34 +1.1 300,304 + HP15_309 0.37 -0.8 300,405 - HP15_309 0.42 +1.7 300,427 - HP15_309 0.43 +2.0
Or see this region's nucleotide sequence