Strain Fitness in Marinobacter adhaerens HP15 around HP15_3021

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3019 and HP15_3020 are separated by 3 nucleotidesHP15_3020 and HP15_3021 are separated by 12 nucleotidesHP15_3021 and HP15_3022 are separated by 128 nucleotides HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623 _3019 HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247 _3020 HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691 _3021 HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028 _3022 Position (kb) 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2at 3164.312 kb on + strand, within HP15_3019at 3164.393 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.459 kb on + strand, within HP15_3019at 3164.474 kb on - strand, within HP15_3019at 3164.578 kb on - strandat 3164.688 kb on - strandat 3164.696 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.059 kb on - strand, within HP15_3020at 3165.064 kb on + strand, within HP15_3020at 3165.251 kb on - strandat 3165.294 kb on - strandat 3165.398 kb on + strand, within HP15_3021at 3165.414 kb on + strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.438 kb on + strand, within HP15_3021at 3165.659 kb on - strandat 3165.697 kb on + strandat 3165.704 kb on + strandat 3165.712 kb on - strandat 3165.712 kb on - strandat 3165.834 kb on + strandat 3166.076 kb on - strand, within HP15_3022at 3166.146 kb on - strand, within HP15_3022at 3166.196 kb on - strand, within HP15_3022at 3166.408 kb on - strand, within HP15_3022at 3166.416 kb on + strand, within HP15_3022at 3166.432 kb on - strand, within HP15_3022at 3166.490 kb on + strand, within HP15_3022at 3166.490 kb on + strand, within HP15_3022at 3166.498 kb on - strand, within HP15_3022at 3166.597 kb on + strand, within HP15_3022at 3166.669 kb on + strand, within HP15_3022

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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3,164,312 + HP15_3019 0.68 +0.4
3,164,393 - HP15_3019 0.76 -0.7
3,164,403 - HP15_3019 0.77 -1.4
3,164,403 - HP15_3019 0.77 +2.1
3,164,459 + HP15_3019 0.83 +2.1
3,164,474 - HP15_3019 0.85 +0.1
3,164,578 - -1.7
3,164,688 - -0.5
3,164,696 - HP15_3020 0.11 +0.7
3,165,000 - HP15_3020 0.60 -0.0
3,165,000 - HP15_3020 0.60 -0.0
3,165,059 - HP15_3020 0.70 +2.0
3,165,064 + HP15_3020 0.70 +0.5
3,165,251 - -0.4
3,165,294 - -0.9
3,165,398 + HP15_3021 0.32 +0.5
3,165,414 + HP15_3021 0.36 +0.1
3,165,422 - HP15_3021 0.38 -0.2
3,165,422 - HP15_3021 0.38 +1.1
3,165,438 + HP15_3021 0.41 +1.7
3,165,659 - +0.1
3,165,697 + +2.5
3,165,704 + +0.5
3,165,712 - -0.1
3,165,712 - -0.8
3,165,834 + -0.8
3,166,076 - HP15_3022 0.21 +1.3
3,166,146 - HP15_3022 0.27 -1.7
3,166,196 - HP15_3022 0.31 -1.3
3,166,408 - HP15_3022 0.49 -1.9
3,166,416 + HP15_3022 0.49 -0.5
3,166,432 - HP15_3022 0.51 +0.9
3,166,490 + HP15_3022 0.55 -1.5
3,166,490 + HP15_3022 0.55 -0.1
3,166,498 - HP15_3022 0.56 -1.3
3,166,597 + HP15_3022 0.64 +1.5
3,166,669 + HP15_3022 0.70 -0.5

Or see this region's nucleotide sequence