Strain Fitness in Marinobacter adhaerens HP15 around HP15_2972

Experiment: D-Glucosamine Hydrochloride as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2971 and HP15_2972 are separated by 215 nucleotidesHP15_2972 and HP15_2973 are separated by 98 nucleotidesHP15_2973 and HP15_2974 are separated by 166 nucleotides HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154 _2971 HP15_2972: HP15_2972 - cyclic nucleotide-binding protein, at 3,116,370 to 3,117,029 _2972 HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727 _2973 HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595 _2974 Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -2 -1 0 1 2at 3115.406 kb on + strand, within HP15_2971at 3115.406 kb on + strand, within HP15_2971at 3115.425 kb on - strand, within HP15_2971at 3115.447 kb on - strand, within HP15_2971at 3115.463 kb on + strand, within HP15_2971at 3115.466 kb on - strand, within HP15_2971at 3115.570 kb on + strand, within HP15_2971at 3115.660 kb on + strand, within HP15_2971at 3115.668 kb on - strand, within HP15_2971at 3115.721 kb on + strand, within HP15_2971at 3115.758 kb on + strand, within HP15_2971at 3115.766 kb on - strand, within HP15_2971at 3115.821 kb on - strand, within HP15_2971at 3115.864 kb on - strand, within HP15_2971at 3115.960 kb on + strand, within HP15_2971at 3116.060 kb on + strand, within HP15_2971at 3116.160 kb on - strandat 3116.173 kb on + strandat 3116.291 kb on + strandat 3116.352 kb on - strandat 3116.403 kb on - strandat 3116.578 kb on + strand, within HP15_2972at 3116.802 kb on + strand, within HP15_2972at 3116.936 kb on + strand, within HP15_2972at 3116.977 kb on + strandat 3117.022 kb on + strandat 3117.042 kb on + strandat 3117.265 kb on + strand, within HP15_2973at 3117.489 kb on + strand, within HP15_2973at 3117.537 kb on + strand, within HP15_2973at 3117.654 kb on - strand, within HP15_2973at 3117.668 kb on - strandat 3117.728 kb on + strandat 3117.775 kb on + strandat 3117.858 kb on + strandat 3117.947 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
remove
3,115,406 + HP15_2971 0.18 -1.0
3,115,406 + HP15_2971 0.18 -0.7
3,115,425 - HP15_2971 0.20 -0.7
3,115,447 - HP15_2971 0.23 +0.5
3,115,463 + HP15_2971 0.25 +2.1
3,115,466 - HP15_2971 0.25 +2.0
3,115,570 + HP15_2971 0.36 +0.2
3,115,660 + HP15_2971 0.46 -0.7
3,115,668 - HP15_2971 0.47 -0.4
3,115,721 + HP15_2971 0.53 +2.6
3,115,758 + HP15_2971 0.57 +0.2
3,115,766 - HP15_2971 0.58 -0.4
3,115,821 - HP15_2971 0.64 -0.6
3,115,864 - HP15_2971 0.68 +2.4
3,115,960 + HP15_2971 0.79 -0.3
3,116,060 + HP15_2971 0.90 +2.1
3,116,160 - -0.9
3,116,173 + -0.4
3,116,291 + -0.1
3,116,352 - -0.1
3,116,403 - +0.2
3,116,578 + HP15_2972 0.32 -2.3
3,116,802 + HP15_2972 0.65 -0.4
3,116,936 + HP15_2972 0.86 +0.7
3,116,977 + -0.6
3,117,022 + -0.5
3,117,042 + +0.5
3,117,265 + HP15_2973 0.23 +1.2
3,117,489 + HP15_2973 0.60 +2.0
3,117,537 + HP15_2973 0.68 +1.8
3,117,654 - HP15_2973 0.88 +1.2
3,117,668 - +2.5
3,117,728 + +2.3
3,117,775 + +1.5
3,117,858 + +2.0
3,117,947 - +1.8

Or see this region's nucleotide sequence