Strain Fitness in Marinobacter adhaerens HP15 around HP15_2815

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2811 and HP15_2812 are separated by 137 nucleotidesHP15_2812 and HP15_2813 are separated by 8 nucleotidesHP15_2813 and HP15_2814 are separated by 80 nucleotidesHP15_2814 and HP15_2815 are separated by 153 nucleotidesHP15_2815 and HP15_2816 are separated by 108 nucleotidesHP15_2816 and HP15_2817 are separated by 51 nucleotidesHP15_2817 and HP15_2818 are separated by 42 nucleotides HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429 _2811 HP15_2812: HP15_2812 - conserved hypothetical protein, at 2,962,567 to 2,962,752 _2812 HP15_2813: HP15_2813 - conserved hypothetical protein, at 2,962,761 to 2,962,919 _2813 HP15_2814: HP15_2814 - rhodanese domain sulfurtransferase-like protein, at 2,963,000 to 2,963,248 _2814 HP15_2815: HP15_2815 - conserved hypothetical protein, membrane, at 2,963,402 to 2,963,605 _2815 HP15_2816: HP15_2816 - membrane protein containing DUF1328, at 2,963,714 to 2,963,890 _2816 HP15_2817: HP15_2817 - MgtC/SapB transporter, at 2,963,942 to 2,964,394 _2817 HP15_2818: HP15_2818 - conserved hypothetical protein, at 2,964,437 to 2,964,871 _2818 Position (kb) 2963 2964Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2962.405 kb on - strandat 2962.480 kb on + strandat 2962.607 kb on + strand, within HP15_2812at 2962.719 kb on + strand, within HP15_2812at 2962.784 kb on - strand, within HP15_2813at 2962.810 kb on + strand, within HP15_2813at 2962.863 kb on + strand, within HP15_2813at 2962.863 kb on + strand, within HP15_2813at 2962.895 kb on - strand, within HP15_2813at 2962.929 kb on - strandat 2962.968 kb on - strandat 2962.999 kb on + strandat 2963.069 kb on + strand, within HP15_2814at 2963.147 kb on + strand, within HP15_2814at 2963.325 kb on + strandat 2963.401 kb on + strandat 2963.531 kb on + strand, within HP15_2815at 2963.565 kb on + strand, within HP15_2815at 2963.573 kb on - strand, within HP15_2815at 2963.573 kb on - strand, within HP15_2815at 2963.639 kb on - strandat 2963.700 kb on - strandat 2963.754 kb on + strand, within HP15_2816at 2963.791 kb on - strand, within HP15_2816at 2963.885 kb on + strandat 2963.885 kb on + strandat 2963.885 kb on + strandat 2963.885 kb on + strandat 2963.956 kb on + strandat 2963.986 kb on + strandat 2963.986 kb on + strandat 2963.986 kb on + strandat 2964.032 kb on - strand, within HP15_2817at 2964.060 kb on - strand, within HP15_2817at 2964.158 kb on - strand, within HP15_2817at 2964.158 kb on - strand, within HP15_2817at 2964.218 kb on + strand, within HP15_2817at 2964.226 kb on - strand, within HP15_2817at 2964.242 kb on + strand, within HP15_2817at 2964.244 kb on - strand, within HP15_2817at 2964.428 kb on + strandat 2964.461 kb on - strandat 2964.511 kb on - strand, within HP15_2818at 2964.525 kb on + strand, within HP15_2818at 2964.558 kb on + strand, within HP15_2818at 2964.566 kb on - strand, within HP15_2818at 2964.581 kb on - strand, within HP15_2818

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,962,405 - +2.3
2,962,480 + +2.3
2,962,607 + HP15_2812 0.22 +0.0
2,962,719 + HP15_2812 0.82 -1.4
2,962,784 - HP15_2813 0.14 +0.0
2,962,810 + HP15_2813 0.31 -0.7
2,962,863 + HP15_2813 0.64 -0.7
2,962,863 + HP15_2813 0.64 -0.5
2,962,895 - HP15_2813 0.84 +0.4
2,962,929 - -1.0
2,962,968 - -1.3
2,962,999 + +2.2
2,963,069 + HP15_2814 0.28 -0.2
2,963,147 + HP15_2814 0.59 +1.7
2,963,325 + +2.3
2,963,401 + -0.3
2,963,531 + HP15_2815 0.63 -1.9
2,963,565 + HP15_2815 0.80 -0.9
2,963,573 - HP15_2815 0.84 +0.0
2,963,573 - HP15_2815 0.84 +1.8
2,963,639 - -0.7
2,963,700 - +2.1
2,963,754 + HP15_2816 0.23 -0.3
2,963,791 - HP15_2816 0.44 -2.2
2,963,885 + -0.1
2,963,885 + +1.5
2,963,885 + +2.0
2,963,885 + -1.3
2,963,956 + +2.1
2,963,986 + +0.1
2,963,986 + +0.1
2,963,986 + +2.2
2,964,032 - HP15_2817 0.20 +1.9
2,964,060 - HP15_2817 0.26 +1.8
2,964,158 - HP15_2817 0.48 +0.4
2,964,158 - HP15_2817 0.48 +0.1
2,964,218 + HP15_2817 0.61 -0.3
2,964,226 - HP15_2817 0.63 -0.3
2,964,242 + HP15_2817 0.66 +2.2
2,964,244 - HP15_2817 0.67 +3.8
2,964,428 + -0.3
2,964,461 - -0.1
2,964,511 - HP15_2818 0.17 +0.6
2,964,525 + HP15_2818 0.20 -0.7
2,964,558 + HP15_2818 0.28 +0.2
2,964,566 - HP15_2818 0.30 +0.7
2,964,581 - HP15_2818 0.33 +1.9

Or see this region's nucleotide sequence