Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2811 and HP15_2812 are separated by 137 nucleotides HP15_2812 and HP15_2813 are separated by 8 nucleotides HP15_2813 and HP15_2814 are separated by 80 nucleotides HP15_2814 and HP15_2815 are separated by 153 nucleotides HP15_2815 and HP15_2816 are separated by 108 nucleotides HP15_2816 and HP15_2817 are separated by 51 nucleotides HP15_2817 and HP15_2818 are separated by 42 nucleotides
HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429
_2811
HP15_2812: HP15_2812 - conserved hypothetical protein, at 2,962,567 to 2,962,752
_2812
HP15_2813: HP15_2813 - conserved hypothetical protein, at 2,962,761 to 2,962,919
_2813
HP15_2814: HP15_2814 - rhodanese domain sulfurtransferase-like protein, at 2,963,000 to 2,963,248
_2814
HP15_2815: HP15_2815 - conserved hypothetical protein, membrane, at 2,963,402 to 2,963,605
_2815
HP15_2816: HP15_2816 - membrane protein containing DUF1328, at 2,963,714 to 2,963,890
_2816
HP15_2817: HP15_2817 - MgtC/SapB transporter, at 2,963,942 to 2,964,394
_2817
HP15_2818: HP15_2818 - conserved hypothetical protein, at 2,964,437 to 2,964,871
_2818
Position (kb)
2963
2964 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2962.405 kb on - strand at 2962.480 kb on + strand at 2962.607 kb on + strand, within HP15_2812 at 2962.719 kb on + strand, within HP15_2812 at 2962.784 kb on - strand, within HP15_2813 at 2962.810 kb on + strand, within HP15_2813 at 2962.863 kb on + strand, within HP15_2813 at 2962.863 kb on + strand, within HP15_2813 at 2962.895 kb on - strand, within HP15_2813 at 2962.929 kb on - strand at 2962.968 kb on - strand at 2962.999 kb on + strand at 2963.069 kb on + strand, within HP15_2814 at 2963.147 kb on + strand, within HP15_2814 at 2963.325 kb on + strand at 2963.401 kb on + strand at 2963.531 kb on + strand, within HP15_2815 at 2963.565 kb on + strand, within HP15_2815 at 2963.573 kb on - strand, within HP15_2815 at 2963.573 kb on - strand, within HP15_2815 at 2963.639 kb on - strand at 2963.700 kb on - strand at 2963.754 kb on + strand, within HP15_2816 at 2963.791 kb on - strand, within HP15_2816 at 2963.885 kb on + strand at 2963.885 kb on + strand at 2963.885 kb on + strand at 2963.885 kb on + strand at 2963.956 kb on + strand at 2963.986 kb on + strand at 2963.986 kb on + strand at 2963.986 kb on + strand at 2964.032 kb on - strand, within HP15_2817 at 2964.060 kb on - strand, within HP15_2817 at 2964.158 kb on - strand, within HP15_2817 at 2964.158 kb on - strand, within HP15_2817 at 2964.218 kb on + strand, within HP15_2817 at 2964.226 kb on - strand, within HP15_2817 at 2964.242 kb on + strand, within HP15_2817 at 2964.244 kb on - strand, within HP15_2817 at 2964.428 kb on + strand at 2964.461 kb on - strand at 2964.511 kb on - strand, within HP15_2818 at 2964.525 kb on + strand, within HP15_2818 at 2964.558 kb on + strand, within HP15_2818 at 2964.566 kb on - strand, within HP15_2818 at 2964.581 kb on - strand, within HP15_2818
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,962,405 - +2.3 2,962,480 + +2.3 2,962,607 + HP15_2812 0.22 +0.0 2,962,719 + HP15_2812 0.82 -1.4 2,962,784 - HP15_2813 0.14 +0.0 2,962,810 + HP15_2813 0.31 -0.7 2,962,863 + HP15_2813 0.64 -0.7 2,962,863 + HP15_2813 0.64 -0.5 2,962,895 - HP15_2813 0.84 +0.4 2,962,929 - -1.0 2,962,968 - -1.3 2,962,999 + +2.2 2,963,069 + HP15_2814 0.28 -0.2 2,963,147 + HP15_2814 0.59 +1.7 2,963,325 + +2.3 2,963,401 + -0.3 2,963,531 + HP15_2815 0.63 -1.9 2,963,565 + HP15_2815 0.80 -0.9 2,963,573 - HP15_2815 0.84 +0.0 2,963,573 - HP15_2815 0.84 +1.8 2,963,639 - -0.7 2,963,700 - +2.1 2,963,754 + HP15_2816 0.23 -0.3 2,963,791 - HP15_2816 0.44 -2.2 2,963,885 + -0.1 2,963,885 + +1.5 2,963,885 + +2.0 2,963,885 + -1.3 2,963,956 + +2.1 2,963,986 + +0.1 2,963,986 + +0.1 2,963,986 + +2.2 2,964,032 - HP15_2817 0.20 +1.9 2,964,060 - HP15_2817 0.26 +1.8 2,964,158 - HP15_2817 0.48 +0.4 2,964,158 - HP15_2817 0.48 +0.1 2,964,218 + HP15_2817 0.61 -0.3 2,964,226 - HP15_2817 0.63 -0.3 2,964,242 + HP15_2817 0.66 +2.2 2,964,244 - HP15_2817 0.67 +3.8 2,964,428 + -0.3 2,964,461 - -0.1 2,964,511 - HP15_2818 0.17 +0.6 2,964,525 + HP15_2818 0.20 -0.7 2,964,558 + HP15_2818 0.28 +0.2 2,964,566 - HP15_2818 0.30 +0.7 2,964,581 - HP15_2818 0.33 +1.9
Or see this region's nucleotide sequence