Strain Fitness in Marinobacter adhaerens HP15 around HP15_2689

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2688 and HP15_2689 are separated by 170 nucleotidesHP15_2689 and HP15_2690 are separated by 266 nucleotidesHP15_2690 and HP15_2691 are separated by 32 nucleotides HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,835,400 to 2,839,029 _2688 HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586 _2689 HP15_2690: HP15_2690 - transcriptional regulator, AsnC family, at 2,842,853 to 2,843,305 _2690 HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060 _2691 Position (kb) 2839 2840 2841 2842 2843Strain fitness (log2 ratio) -1 0 1 2at 2838.251 kb on + strand, within HP15_2688at 2838.458 kb on + strand, within HP15_2688at 2838.466 kb on - strand, within HP15_2688at 2838.508 kb on + strand, within HP15_2688at 2838.560 kb on + strand, within HP15_2688at 2838.568 kb on - strand, within HP15_2688at 2838.581 kb on + strand, within HP15_2688at 2838.588 kb on - strand, within HP15_2688at 2838.636 kb on + strand, within HP15_2688at 2838.660 kb on + strand, within HP15_2688at 2838.660 kb on + strand, within HP15_2688at 2838.668 kb on - strandat 2838.668 kb on - strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.944 kb on + strandat 2839.480 kb on - strandat 2839.522 kb on - strandat 2839.524 kb on - strandat 2839.840 kb on - strand, within HP15_2689at 2839.862 kb on - strand, within HP15_2689at 2839.999 kb on - strand, within HP15_2689at 2840.004 kb on - strand, within HP15_2689at 2840.144 kb on + strand, within HP15_2689at 2840.345 kb on - strand, within HP15_2689at 2840.365 kb on - strand, within HP15_2689at 2840.372 kb on - strand, within HP15_2689at 2840.426 kb on + strand, within HP15_2689at 2840.442 kb on - strand, within HP15_2689at 2840.525 kb on + strand, within HP15_2689at 2840.543 kb on - strand, within HP15_2689at 2840.550 kb on - strand, within HP15_2689at 2840.615 kb on - strand, within HP15_2689at 2840.713 kb on - strand, within HP15_2689at 2840.834 kb on - strand, within HP15_2689at 2840.932 kb on + strand, within HP15_2689at 2841.101 kb on + strand, within HP15_2689at 2841.244 kb on + strand, within HP15_2689at 2841.422 kb on - strand, within HP15_2689at 2841.575 kb on - strand, within HP15_2689at 2841.581 kb on + strand, within HP15_2689at 2841.581 kb on + strand, within HP15_2689at 2841.707 kb on + strand, within HP15_2689at 2841.893 kb on + strand, within HP15_2689at 2841.901 kb on - strand, within HP15_2689at 2841.904 kb on + strand, within HP15_2689at 2842.052 kb on + strand, within HP15_2689at 2842.231 kb on - strand, within HP15_2689at 2842.252 kb on + strandat 2842.440 kb on - strandat 2842.440 kb on - strandat 2842.442 kb on + strandat 2842.529 kb on + strandat 2842.530 kb on - strandat 2842.598 kb on + strandat 2842.598 kb on + strandat 2842.730 kb on - strandat 2842.895 kb on + strandat 2842.940 kb on - strand, within HP15_2690at 2842.988 kb on - strand, within HP15_2690at 2842.988 kb on - strand, within HP15_2690at 2842.988 kb on - strand, within HP15_2690at 2843.107 kb on + strand, within HP15_2690at 2843.252 kb on + strand, within HP15_2690at 2843.284 kb on + strandat 2843.386 kb on + strandat 2843.410 kb on - strandat 2843.468 kb on + strand, within HP15_2691at 2843.558 kb on + strand, within HP15_2691at 2843.561 kb on - strand, within HP15_2691at 2843.566 kb on - strand, within HP15_2691

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,838,251 + HP15_2688 0.79 +1.3
2,838,458 + HP15_2688 0.84 +2.4
2,838,466 - HP15_2688 0.84 +0.6
2,838,508 + HP15_2688 0.86 +2.5
2,838,560 + HP15_2688 0.87 -0.7
2,838,568 - HP15_2688 0.87 -0.1
2,838,581 + HP15_2688 0.88 -0.6
2,838,588 - HP15_2688 0.88 +2.3
2,838,636 + HP15_2688 0.89 +2.0
2,838,660 + HP15_2688 0.90 +2.6
2,838,660 + HP15_2688 0.90 +2.2
2,838,668 - +2.3
2,838,668 - -0.7
2,838,775 + +2.4
2,838,775 + +2.3
2,838,775 + +0.1
2,838,775 + +2.0
2,838,783 - +1.9
2,838,783 - -0.2
2,838,783 - +2.4
2,838,783 - +1.9
2,838,913 - -0.2
2,838,913 - -0.4
2,838,944 + -0.5
2,839,480 - +2.3
2,839,522 - -0.0
2,839,524 - -0.1
2,839,840 - HP15_2689 0.19 +0.2
2,839,862 - HP15_2689 0.20 +1.7
2,839,999 - HP15_2689 0.24 -0.4
2,840,004 - HP15_2689 0.24 +1.9
2,840,144 + HP15_2689 0.28 -0.5
2,840,345 - HP15_2689 0.34 -1.1
2,840,365 - HP15_2689 0.34 -0.0
2,840,372 - HP15_2689 0.35 -1.0
2,840,426 + HP15_2689 0.36 +0.8
2,840,442 - HP15_2689 0.37 -0.2
2,840,525 + HP15_2689 0.39 +2.6
2,840,543 - HP15_2689 0.40 +1.8
2,840,550 - HP15_2689 0.40 -0.1
2,840,615 - HP15_2689 0.42 +2.1
2,840,713 - HP15_2689 0.45 -0.2
2,840,834 - HP15_2689 0.48 -0.5
2,840,932 + HP15_2689 0.51 -0.9
2,841,101 + HP15_2689 0.56 -0.8
2,841,244 + HP15_2689 0.60 -0.4
2,841,422 - HP15_2689 0.66 +1.9
2,841,575 - HP15_2689 0.70 +2.0
2,841,581 + HP15_2689 0.70 -0.4
2,841,581 + HP15_2689 0.70 -0.4
2,841,707 + HP15_2689 0.74 +0.3
2,841,893 + HP15_2689 0.80 -0.4
2,841,901 - HP15_2689 0.80 -0.8
2,841,904 + HP15_2689 0.80 -1.0
2,842,052 + HP15_2689 0.84 -0.4
2,842,231 - HP15_2689 0.89 -0.1
2,842,252 + -0.1
2,842,440 - -0.7
2,842,440 - -0.4
2,842,442 + +0.1
2,842,529 + -0.5
2,842,530 - +0.2
2,842,598 + -1.0
2,842,598 + -1.1
2,842,730 - -0.6
2,842,895 + +2.1
2,842,940 - HP15_2690 0.19 -0.2
2,842,988 - HP15_2690 0.30 +0.2
2,842,988 - HP15_2690 0.30 +0.3
2,842,988 - HP15_2690 0.30 +0.9
2,843,107 + HP15_2690 0.56 +2.4
2,843,252 + HP15_2690 0.88 -0.6
2,843,284 + -1.2
2,843,386 + +0.8
2,843,410 - +1.9
2,843,468 + HP15_2691 0.18 +2.4
2,843,558 + HP15_2691 0.30 -0.4
2,843,561 - HP15_2691 0.31 +2.2
2,843,566 - HP15_2691 0.32 -0.8

Or see this region's nucleotide sequence