Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2688 and HP15_2689 are separated by 170 nucleotides HP15_2689 and HP15_2690 are separated by 266 nucleotides HP15_2690 and HP15_2691 are separated by 32 nucleotides
HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,835,400 to 2,839,029
_2688
HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586
_2689
HP15_2690: HP15_2690 - transcriptional regulator, AsnC family, at 2,842,853 to 2,843,305
_2690
HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060
_2691
Position (kb)
2839
2840
2841
2842
2843 Strain fitness (log2 ratio)
-1
0
1
2 at 2838.251 kb on + strand, within HP15_2688 at 2838.458 kb on + strand, within HP15_2688 at 2838.466 kb on - strand, within HP15_2688 at 2838.508 kb on + strand, within HP15_2688 at 2838.560 kb on + strand, within HP15_2688 at 2838.568 kb on - strand, within HP15_2688 at 2838.581 kb on + strand, within HP15_2688 at 2838.588 kb on - strand, within HP15_2688 at 2838.636 kb on + strand, within HP15_2688 at 2838.660 kb on + strand, within HP15_2688 at 2838.660 kb on + strand, within HP15_2688 at 2838.668 kb on - strand at 2838.668 kb on - strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.913 kb on - strand at 2838.913 kb on - strand at 2838.944 kb on + strand at 2839.480 kb on - strand at 2839.522 kb on - strand at 2839.524 kb on - strand at 2839.840 kb on - strand, within HP15_2689 at 2839.862 kb on - strand, within HP15_2689 at 2839.999 kb on - strand, within HP15_2689 at 2840.004 kb on - strand, within HP15_2689 at 2840.144 kb on + strand, within HP15_2689 at 2840.345 kb on - strand, within HP15_2689 at 2840.365 kb on - strand, within HP15_2689 at 2840.372 kb on - strand, within HP15_2689 at 2840.426 kb on + strand, within HP15_2689 at 2840.442 kb on - strand, within HP15_2689 at 2840.525 kb on + strand, within HP15_2689 at 2840.543 kb on - strand, within HP15_2689 at 2840.550 kb on - strand, within HP15_2689 at 2840.615 kb on - strand, within HP15_2689 at 2840.713 kb on - strand, within HP15_2689 at 2840.834 kb on - strand, within HP15_2689 at 2840.932 kb on + strand, within HP15_2689 at 2841.101 kb on + strand, within HP15_2689 at 2841.244 kb on + strand, within HP15_2689 at 2841.422 kb on - strand, within HP15_2689 at 2841.575 kb on - strand, within HP15_2689 at 2841.581 kb on + strand, within HP15_2689 at 2841.581 kb on + strand, within HP15_2689 at 2841.707 kb on + strand, within HP15_2689 at 2841.893 kb on + strand, within HP15_2689 at 2841.901 kb on - strand, within HP15_2689 at 2841.904 kb on + strand, within HP15_2689 at 2842.052 kb on + strand, within HP15_2689 at 2842.231 kb on - strand, within HP15_2689 at 2842.252 kb on + strand at 2842.440 kb on - strand at 2842.440 kb on - strand at 2842.442 kb on + strand at 2842.529 kb on + strand at 2842.530 kb on - strand at 2842.598 kb on + strand at 2842.598 kb on + strand at 2842.730 kb on - strand at 2842.895 kb on + strand at 2842.940 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2843.107 kb on + strand, within HP15_2690 at 2843.252 kb on + strand, within HP15_2690 at 2843.284 kb on + strand at 2843.386 kb on + strand at 2843.410 kb on - strand at 2843.468 kb on + strand, within HP15_2691 at 2843.558 kb on + strand, within HP15_2691 at 2843.561 kb on - strand, within HP15_2691 at 2843.566 kb on - strand, within HP15_2691
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,838,251 + HP15_2688 0.79 +1.3 2,838,458 + HP15_2688 0.84 +2.4 2,838,466 - HP15_2688 0.84 +0.6 2,838,508 + HP15_2688 0.86 +2.5 2,838,560 + HP15_2688 0.87 -0.7 2,838,568 - HP15_2688 0.87 -0.1 2,838,581 + HP15_2688 0.88 -0.6 2,838,588 - HP15_2688 0.88 +2.3 2,838,636 + HP15_2688 0.89 +2.0 2,838,660 + HP15_2688 0.90 +2.6 2,838,660 + HP15_2688 0.90 +2.2 2,838,668 - +2.3 2,838,668 - -0.7 2,838,775 + +2.4 2,838,775 + +2.3 2,838,775 + +0.1 2,838,775 + +2.0 2,838,783 - +1.9 2,838,783 - -0.2 2,838,783 - +2.4 2,838,783 - +1.9 2,838,913 - -0.2 2,838,913 - -0.4 2,838,944 + -0.5 2,839,480 - +2.3 2,839,522 - -0.0 2,839,524 - -0.1 2,839,840 - HP15_2689 0.19 +0.2 2,839,862 - HP15_2689 0.20 +1.7 2,839,999 - HP15_2689 0.24 -0.4 2,840,004 - HP15_2689 0.24 +1.9 2,840,144 + HP15_2689 0.28 -0.5 2,840,345 - HP15_2689 0.34 -1.1 2,840,365 - HP15_2689 0.34 -0.0 2,840,372 - HP15_2689 0.35 -1.0 2,840,426 + HP15_2689 0.36 +0.8 2,840,442 - HP15_2689 0.37 -0.2 2,840,525 + HP15_2689 0.39 +2.6 2,840,543 - HP15_2689 0.40 +1.8 2,840,550 - HP15_2689 0.40 -0.1 2,840,615 - HP15_2689 0.42 +2.1 2,840,713 - HP15_2689 0.45 -0.2 2,840,834 - HP15_2689 0.48 -0.5 2,840,932 + HP15_2689 0.51 -0.9 2,841,101 + HP15_2689 0.56 -0.8 2,841,244 + HP15_2689 0.60 -0.4 2,841,422 - HP15_2689 0.66 +1.9 2,841,575 - HP15_2689 0.70 +2.0 2,841,581 + HP15_2689 0.70 -0.4 2,841,581 + HP15_2689 0.70 -0.4 2,841,707 + HP15_2689 0.74 +0.3 2,841,893 + HP15_2689 0.80 -0.4 2,841,901 - HP15_2689 0.80 -0.8 2,841,904 + HP15_2689 0.80 -1.0 2,842,052 + HP15_2689 0.84 -0.4 2,842,231 - HP15_2689 0.89 -0.1 2,842,252 + -0.1 2,842,440 - -0.7 2,842,440 - -0.4 2,842,442 + +0.1 2,842,529 + -0.5 2,842,530 - +0.2 2,842,598 + -1.0 2,842,598 + -1.1 2,842,730 - -0.6 2,842,895 + +2.1 2,842,940 - HP15_2690 0.19 -0.2 2,842,988 - HP15_2690 0.30 +0.2 2,842,988 - HP15_2690 0.30 +0.3 2,842,988 - HP15_2690 0.30 +0.9 2,843,107 + HP15_2690 0.56 +2.4 2,843,252 + HP15_2690 0.88 -0.6 2,843,284 + -1.2 2,843,386 + +0.8 2,843,410 - +1.9 2,843,468 + HP15_2691 0.18 +2.4 2,843,558 + HP15_2691 0.30 -0.4 2,843,561 - HP15_2691 0.31 +2.2 2,843,566 - HP15_2691 0.32 -0.8
Or see this region's nucleotide sequence