Strain Fitness in Marinobacter adhaerens HP15 around HP15_2621

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2620 and HP15_2621 are separated by 88 nucleotidesHP15_2621 and HP15_2622 overlap by 11 nucleotides HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579 _2620 HP15_2621: HP15_2621 - branched-chain amino acid transport, at 2,772,668 to 2,772,979 _2621 HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715 _2622 Position (kb) 2772 2773Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2771.668 kb on - strand, within HP15_2620at 2771.680 kb on + strand, within HP15_2620at 2771.728 kb on + strand, within HP15_2620at 2771.756 kb on + strand, within HP15_2620at 2771.761 kb on + strand, within HP15_2620at 2771.793 kb on - strand, within HP15_2620at 2771.914 kb on - strand, within HP15_2620at 2771.968 kb on - strand, within HP15_2620at 2772.018 kb on - strand, within HP15_2620at 2772.240 kb on - strand, within HP15_2620at 2772.254 kb on + strand, within HP15_2620at 2772.340 kb on + strand, within HP15_2620at 2772.340 kb on + strand, within HP15_2620at 2772.525 kb on - strandat 2772.525 kb on - strandat 2772.534 kb on + strandat 2772.539 kb on + strandat 2772.581 kb on + strandat 2772.615 kb on - strandat 2772.726 kb on + strand, within HP15_2621at 2772.831 kb on - strand, within HP15_2621at 2772.836 kb on - strand, within HP15_2621at 2772.947 kb on - strand, within HP15_2621at 2772.990 kb on - strandat 2773.105 kb on + strand, within HP15_2622at 2773.113 kb on - strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.249 kb on + strand, within HP15_2622at 2773.256 kb on - strand, within HP15_2622at 2773.266 kb on - strand, within HP15_2622at 2773.392 kb on - strand, within HP15_2622at 2773.425 kb on - strand, within HP15_2622at 2773.517 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.557 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.879 kb on - strandat 2773.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,771,668 - HP15_2620 0.31 +0.6
2,771,680 + HP15_2620 0.32 -0.9
2,771,728 + HP15_2620 0.35 +2.3
2,771,756 + HP15_2620 0.37 +2.2
2,771,761 + HP15_2620 0.38 +0.3
2,771,793 - HP15_2620 0.40 +2.1
2,771,914 - HP15_2620 0.49 +1.0
2,771,968 - HP15_2620 0.54 -0.4
2,772,018 - HP15_2620 0.57 -0.5
2,772,240 - HP15_2620 0.74 +1.8
2,772,254 + HP15_2620 0.75 -0.5
2,772,340 + HP15_2620 0.82 +1.7
2,772,340 + HP15_2620 0.82 +2.0
2,772,525 - +2.1
2,772,525 - -1.8
2,772,534 + -0.9
2,772,539 + -0.2
2,772,581 + +2.1
2,772,615 - +1.2
2,772,726 + HP15_2621 0.19 +0.2
2,772,831 - HP15_2621 0.52 +2.2
2,772,836 - HP15_2621 0.54 +2.3
2,772,947 - HP15_2621 0.89 +1.8
2,772,990 - -0.8
2,773,105 + HP15_2622 0.18 +2.0
2,773,113 - HP15_2622 0.19 +2.1
2,773,188 + HP15_2622 0.29 +2.5
2,773,188 + HP15_2622 0.29 -0.9
2,773,249 + HP15_2622 0.37 -0.7
2,773,256 - HP15_2622 0.38 +0.4
2,773,266 - HP15_2622 0.40 -0.8
2,773,392 - HP15_2622 0.57 -0.2
2,773,425 - HP15_2622 0.61 -0.5
2,773,517 - HP15_2622 0.73 +2.8
2,773,555 - HP15_2622 0.78 -0.7
2,773,555 - HP15_2622 0.78 -0.2
2,773,557 + HP15_2622 0.79 -1.1
2,773,577 + HP15_2622 0.81 -2.3
2,773,577 + HP15_2622 0.81 +2.4
2,773,879 - -1.9
2,773,975 + +0.9

Or see this region's nucleotide sequence