Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2620 and HP15_2621 are separated by 88 nucleotides HP15_2621 and HP15_2622 overlap by 11 nucleotides
HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579
_2620
HP15_2621: HP15_2621 - branched-chain amino acid transport, at 2,772,668 to 2,772,979
_2621
HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715
_2622
Position (kb)
2772
2773 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2771.668 kb on - strand, within HP15_2620 at 2771.680 kb on + strand, within HP15_2620 at 2771.728 kb on + strand, within HP15_2620 at 2771.756 kb on + strand, within HP15_2620 at 2771.761 kb on + strand, within HP15_2620 at 2771.793 kb on - strand, within HP15_2620 at 2771.914 kb on - strand, within HP15_2620 at 2771.968 kb on - strand, within HP15_2620 at 2772.018 kb on - strand, within HP15_2620 at 2772.240 kb on - strand, within HP15_2620 at 2772.254 kb on + strand, within HP15_2620 at 2772.340 kb on + strand, within HP15_2620 at 2772.340 kb on + strand, within HP15_2620 at 2772.525 kb on - strand at 2772.525 kb on - strand at 2772.534 kb on + strand at 2772.539 kb on + strand at 2772.581 kb on + strand at 2772.615 kb on - strand at 2772.726 kb on + strand, within HP15_2621 at 2772.831 kb on - strand, within HP15_2621 at 2772.836 kb on - strand, within HP15_2621 at 2772.947 kb on - strand, within HP15_2621 at 2772.990 kb on - strand at 2773.105 kb on + strand, within HP15_2622 at 2773.113 kb on - strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.249 kb on + strand, within HP15_2622 at 2773.256 kb on - strand, within HP15_2622 at 2773.266 kb on - strand, within HP15_2622 at 2773.392 kb on - strand, within HP15_2622 at 2773.425 kb on - strand, within HP15_2622 at 2773.517 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.557 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.879 kb on - strand at 2773.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,771,668 - HP15_2620 0.31 +0.6 2,771,680 + HP15_2620 0.32 -0.9 2,771,728 + HP15_2620 0.35 +2.3 2,771,756 + HP15_2620 0.37 +2.2 2,771,761 + HP15_2620 0.38 +0.3 2,771,793 - HP15_2620 0.40 +2.1 2,771,914 - HP15_2620 0.49 +1.0 2,771,968 - HP15_2620 0.54 -0.4 2,772,018 - HP15_2620 0.57 -0.5 2,772,240 - HP15_2620 0.74 +1.8 2,772,254 + HP15_2620 0.75 -0.5 2,772,340 + HP15_2620 0.82 +1.7 2,772,340 + HP15_2620 0.82 +2.0 2,772,525 - +2.1 2,772,525 - -1.8 2,772,534 + -0.9 2,772,539 + -0.2 2,772,581 + +2.1 2,772,615 - +1.2 2,772,726 + HP15_2621 0.19 +0.2 2,772,831 - HP15_2621 0.52 +2.2 2,772,836 - HP15_2621 0.54 +2.3 2,772,947 - HP15_2621 0.89 +1.8 2,772,990 - -0.8 2,773,105 + HP15_2622 0.18 +2.0 2,773,113 - HP15_2622 0.19 +2.1 2,773,188 + HP15_2622 0.29 +2.5 2,773,188 + HP15_2622 0.29 -0.9 2,773,249 + HP15_2622 0.37 -0.7 2,773,256 - HP15_2622 0.38 +0.4 2,773,266 - HP15_2622 0.40 -0.8 2,773,392 - HP15_2622 0.57 -0.2 2,773,425 - HP15_2622 0.61 -0.5 2,773,517 - HP15_2622 0.73 +2.8 2,773,555 - HP15_2622 0.78 -0.7 2,773,555 - HP15_2622 0.78 -0.2 2,773,557 + HP15_2622 0.79 -1.1 2,773,577 + HP15_2622 0.81 -2.3 2,773,577 + HP15_2622 0.81 +2.4 2,773,879 - -1.9 2,773,975 + +0.9
Or see this region's nucleotide sequence