Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2605 and HP15_2606 overlap by 1 nucleotides HP15_2606 and HP15_2607 are separated by 2 nucleotides HP15_2607 and HP15_2608 are separated by 1 nucleotides
HP15_2605: HP15_2605 - regulatory protein, LysR, at 2,755,263 to 2,756,933
_2605
HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323
_2606
HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303
_2607
HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228
_2608
Position (kb)
2756
2757
2758
2759
2760 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2755.942 kb on - strand, within HP15_2605 at 2756.038 kb on - strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.107 kb on + strand, within HP15_2605 at 2756.115 kb on - strand, within HP15_2605 at 2756.156 kb on - strand, within HP15_2605 at 2756.241 kb on + strand, within HP15_2605 at 2756.433 kb on - strand, within HP15_2605 at 2756.515 kb on - strand, within HP15_2605 at 2756.515 kb on - strand, within HP15_2605 at 2756.582 kb on + strand, within HP15_2605 at 2756.665 kb on - strand, within HP15_2605 at 2756.676 kb on + strand, within HP15_2605 at 2756.694 kb on - strand, within HP15_2605 at 2756.700 kb on + strand, within HP15_2605 at 2756.749 kb on - strand, within HP15_2605 at 2756.754 kb on + strand, within HP15_2605 at 2756.826 kb on - strand at 2756.851 kb on + strand at 2756.854 kb on - strand at 2756.854 kb on - strand at 2756.859 kb on - strand at 2756.866 kb on - strand at 2756.956 kb on + strand at 2757.152 kb on + strand at 2757.286 kb on - strand, within HP15_2606 at 2757.292 kb on - strand, within HP15_2606 at 2757.296 kb on + strand, within HP15_2606 at 2757.362 kb on + strand, within HP15_2606 at 2757.374 kb on + strand, within HP15_2606 at 2757.471 kb on + strand, within HP15_2606 at 2757.676 kb on + strand, within HP15_2606 at 2757.814 kb on + strand, within HP15_2606 at 2757.883 kb on - strand, within HP15_2606 at 2757.932 kb on + strand, within HP15_2606 at 2757.962 kb on + strand, within HP15_2606 at 2757.964 kb on + strand, within HP15_2606 at 2757.970 kb on - strand, within HP15_2606 at 2757.978 kb on + strand, within HP15_2606 at 2758.003 kb on + strand, within HP15_2606 at 2758.003 kb on + strand, within HP15_2606 at 2758.003 kb on + strand, within HP15_2606 at 2758.011 kb on - strand, within HP15_2606 at 2758.039 kb on + strand, within HP15_2606 at 2758.065 kb on - strand, within HP15_2606 at 2758.128 kb on + strand, within HP15_2606 at 2758.136 kb on - strand, within HP15_2606 at 2758.143 kb on + strand, within HP15_2606 at 2758.176 kb on + strand, within HP15_2606 at 2758.181 kb on + strand, within HP15_2606 at 2758.194 kb on - strand, within HP15_2606 at 2758.197 kb on + strand, within HP15_2606 at 2758.299 kb on - strand, within HP15_2606 at 2758.338 kb on + strand, within HP15_2606 at 2758.373 kb on + strand, within HP15_2606 at 2758.461 kb on - strand, within HP15_2606 at 2758.470 kb on + strand, within HP15_2606 at 2758.478 kb on - strand, within HP15_2606 at 2758.527 kb on - strand, within HP15_2606 at 2758.593 kb on + strand, within HP15_2606 at 2758.637 kb on + strand, within HP15_2606 at 2758.751 kb on + strand, within HP15_2606 at 2758.760 kb on - strand, within HP15_2606 at 2758.760 kb on - strand, within HP15_2606 at 2758.836 kb on - strand, within HP15_2606 at 2759.008 kb on + strand, within HP15_2606 at 2759.033 kb on + strand, within HP15_2606 at 2759.070 kb on - strand, within HP15_2606 at 2759.252 kb on + strand at 2759.332 kb on - strand at 2759.414 kb on - strand at 2759.425 kb on + strand, within HP15_2607 at 2759.431 kb on - strand, within HP15_2607 at 2759.697 kb on + strand, within HP15_2607 at 2759.728 kb on - strand, within HP15_2607 at 2759.810 kb on - strand, within HP15_2607 at 2759.911 kb on - strand, within HP15_2607 at 2759.999 kb on + strand, within HP15_2607 at 2760.087 kb on + strand, within HP15_2607 at 2760.095 kb on - strand, within HP15_2607 at 2760.134 kb on + strand, within HP15_2607 at 2760.172 kb on + strand, within HP15_2607 at 2760.224 kb on - strand at 2760.245 kb on + strand at 2760.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,755,942 - HP15_2605 0.41 +2.1 2,756,038 - HP15_2605 0.46 -1.5 2,756,056 + HP15_2605 0.47 +0.3 2,756,056 + HP15_2605 0.47 -0.4 2,756,107 + HP15_2605 0.51 -0.5 2,756,115 - HP15_2605 0.51 -0.1 2,756,156 - HP15_2605 0.53 -0.1 2,756,241 + HP15_2605 0.59 -0.1 2,756,433 - HP15_2605 0.70 -0.2 2,756,515 - HP15_2605 0.75 +2.1 2,756,515 - HP15_2605 0.75 +0.2 2,756,582 + HP15_2605 0.79 +1.9 2,756,665 - HP15_2605 0.84 +1.4 2,756,676 + HP15_2605 0.85 +0.7 2,756,694 - HP15_2605 0.86 -0.6 2,756,700 + HP15_2605 0.86 -0.6 2,756,749 - HP15_2605 0.89 +1.0 2,756,754 + HP15_2605 0.89 +2.2 2,756,826 - +2.3 2,756,851 + -0.2 2,756,854 - -0.6 2,756,854 - +0.5 2,756,859 - -2.1 2,756,866 - +0.5 2,756,956 + +1.8 2,757,152 + +2.2 2,757,286 - HP15_2606 0.15 +1.1 2,757,292 - HP15_2606 0.15 -0.3 2,757,296 + HP15_2606 0.15 +0.2 2,757,362 + HP15_2606 0.18 -0.4 2,757,374 + HP15_2606 0.18 +0.9 2,757,471 + HP15_2606 0.23 +1.8 2,757,676 + HP15_2606 0.31 -1.1 2,757,814 + HP15_2606 0.37 +0.6 2,757,883 - HP15_2606 0.40 +2.1 2,757,932 + HP15_2606 0.42 -1.0 2,757,962 + HP15_2606 0.43 -0.4 2,757,964 + HP15_2606 0.43 -0.3 2,757,970 - HP15_2606 0.43 -0.8 2,757,978 + HP15_2606 0.44 +1.8 2,758,003 + HP15_2606 0.45 +2.3 2,758,003 + HP15_2606 0.45 +0.4 2,758,003 + HP15_2606 0.45 +2.2 2,758,011 - HP15_2606 0.45 +0.3 2,758,039 + HP15_2606 0.46 +1.5 2,758,065 - HP15_2606 0.47 -0.2 2,758,128 + HP15_2606 0.50 -1.4 2,758,136 - HP15_2606 0.50 -0.9 2,758,143 + HP15_2606 0.51 -0.6 2,758,176 + HP15_2606 0.52 -0.5 2,758,181 + HP15_2606 0.52 -0.0 2,758,194 - HP15_2606 0.53 -0.5 2,758,197 + HP15_2606 0.53 -0.4 2,758,299 - HP15_2606 0.57 +0.2 2,758,338 + HP15_2606 0.59 +0.7 2,758,373 + HP15_2606 0.60 +2.1 2,758,461 - HP15_2606 0.64 -0.8 2,758,470 + HP15_2606 0.64 -0.5 2,758,478 - HP15_2606 0.65 -0.2 2,758,527 - HP15_2606 0.67 -0.1 2,758,593 + HP15_2606 0.69 +2.2 2,758,637 + HP15_2606 0.71 -0.1 2,758,751 + HP15_2606 0.76 -0.8 2,758,760 - HP15_2606 0.76 -0.7 2,758,760 - HP15_2606 0.76 +1.9 2,758,836 - HP15_2606 0.80 +0.7 2,759,008 + HP15_2606 0.87 -0.9 2,759,033 + HP15_2606 0.88 -0.1 2,759,070 - HP15_2606 0.89 -0.6 2,759,252 + -0.9 2,759,332 - -1.1 2,759,414 - -0.1 2,759,425 + HP15_2607 0.10 -0.2 2,759,431 - HP15_2607 0.11 +0.8 2,759,697 + HP15_2607 0.38 -0.4 2,759,728 - HP15_2607 0.41 -0.0 2,759,810 - HP15_2607 0.49 +2.0 2,759,911 - HP15_2607 0.60 +1.8 2,759,999 + HP15_2607 0.69 -0.4 2,760,087 + HP15_2607 0.78 -0.6 2,760,095 - HP15_2607 0.79 +2.8 2,760,134 + HP15_2607 0.83 +1.3 2,760,172 + HP15_2607 0.87 +0.0 2,760,224 - +2.2 2,760,245 + -0.6 2,760,258 - +2.0
Or see this region's nucleotide sequence