Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2514 and HP15_2515 are separated by 66 nucleotides HP15_2515 and HP15_2516 are separated by 27 nucleotides
HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619
_2514
HP15_2515: HP15_2515 - hypothetical protein, at 2,654,686 to 2,654,814
_2515
HP15_2516: HP15_2516 - GTPase - translation elongation factor, at 2,654,842 to 2,656,647
_2516
Position (kb)
2654
2655 Strain fitness (log2 ratio)
-1
0
1
2 at 2653.737 kb on - strand, within HP15_2514 at 2653.793 kb on - strand, within HP15_2514 at 2654.050 kb on - strand, within HP15_2514 at 2654.085 kb on - strand, within HP15_2514 at 2654.349 kb on + strand, within HP15_2514 at 2654.565 kb on + strand at 2654.570 kb on + strand at 2654.702 kb on - strand, within HP15_2515 at 2654.809 kb on - strand at 2654.847 kb on + strand at 2654.869 kb on - strand at 2654.886 kb on - strand at 2654.934 kb on + strand at 2654.969 kb on - strand at 2654.983 kb on - strand at 2655.102 kb on - strand, within HP15_2516 at 2655.170 kb on + strand, within HP15_2516 at 2655.175 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.231 kb on + strand, within HP15_2516 at 2655.267 kb on - strand, within HP15_2516 at 2655.331 kb on + strand, within HP15_2516 at 2655.365 kb on + strand, within HP15_2516 at 2655.392 kb on - strand, within HP15_2516 at 2655.490 kb on - strand, within HP15_2516 at 2655.501 kb on + strand, within HP15_2516 at 2655.518 kb on + strand, within HP15_2516 at 2655.524 kb on - strand, within HP15_2516 at 2655.526 kb on - strand, within HP15_2516 at 2655.528 kb on + strand, within HP15_2516 at 2655.596 kb on + strand, within HP15_2516 at 2655.674 kb on + strand, within HP15_2516 at 2655.745 kb on + strand, within HP15_2516
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,653,737 - HP15_2514 0.15 -0.2 2,653,793 - HP15_2514 0.21 -1.2 2,654,050 - HP15_2514 0.45 +0.8 2,654,085 - HP15_2514 0.49 -0.2 2,654,349 + HP15_2514 0.74 +2.6 2,654,565 + +1.8 2,654,570 + -0.1 2,654,702 - HP15_2515 0.12 -0.4 2,654,809 - +2.7 2,654,847 + +0.8 2,654,869 - +0.8 2,654,886 - -0.6 2,654,934 + -0.0 2,654,969 - -1.2 2,654,983 - +2.0 2,655,102 - HP15_2516 0.14 +2.2 2,655,170 + HP15_2516 0.18 -0.3 2,655,175 + HP15_2516 0.18 +1.6 2,655,188 + HP15_2516 0.19 +0.3 2,655,188 + HP15_2516 0.19 -1.0 2,655,188 + HP15_2516 0.19 -0.5 2,655,231 + HP15_2516 0.22 -0.1 2,655,267 - HP15_2516 0.24 +0.5 2,655,331 + HP15_2516 0.27 -0.6 2,655,365 + HP15_2516 0.29 +2.1 2,655,392 - HP15_2516 0.30 +2.0 2,655,490 - HP15_2516 0.36 -0.2 2,655,501 + HP15_2516 0.36 -0.5 2,655,518 + HP15_2516 0.37 -0.1 2,655,524 - HP15_2516 0.38 +0.9 2,655,526 - HP15_2516 0.38 -0.0 2,655,528 + HP15_2516 0.38 -0.3 2,655,596 + HP15_2516 0.42 -0.4 2,655,674 + HP15_2516 0.46 -0.2 2,655,745 + HP15_2516 0.50 -1.5
Or see this region's nucleotide sequence