Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2330 and HP15_2331 are separated by 89 nucleotides HP15_2331 and HP15_2332 are separated by 17 nucleotides HP15_2332 and HP15_2333 are separated by 224 nucleotides HP15_2333 and HP15_2334 are separated by 51 nucleotides
HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601
_2330
HP15_2331: HP15_2331 - SOS cell division inhibitor, at 2,451,691 to 2,452,020
_2331
HP15_2332: HP15_2332 - secreted protein containing DUF1329, at 2,452,038 to 2,453,396
_2332
HP15_2333: HP15_2333 - conserved hypothetical protein, at 2,453,621 to 2,454,133
_2333
HP15_2334: HP15_2334 - conserved hypothetical protein, at 2,454,185 to 2,454,445
_2334
Position (kb)
2452
2453
2454 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2451.064 kb on + strand, within HP15_2330 at 2451.181 kb on + strand, within HP15_2330 at 2451.207 kb on - strand, within HP15_2330 at 2451.249 kb on + strand, within HP15_2330 at 2451.252 kb on - strand, within HP15_2330 at 2451.254 kb on + strand, within HP15_2330 at 2451.254 kb on + strand, within HP15_2330 at 2451.264 kb on + strand, within HP15_2330 at 2451.272 kb on - strand, within HP15_2330 at 2451.327 kb on + strand, within HP15_2330 at 2451.354 kb on + strand, within HP15_2330 at 2451.381 kb on + strand, within HP15_2330 at 2451.388 kb on - strand, within HP15_2330 at 2451.394 kb on - strand, within HP15_2330 at 2451.396 kb on + strand, within HP15_2330 at 2451.396 kb on + strand, within HP15_2330 at 2451.404 kb on - strand, within HP15_2330 at 2451.491 kb on + strand at 2451.652 kb on + strand at 2451.660 kb on - strand at 2451.660 kb on - strand at 2451.765 kb on - strand, within HP15_2331 at 2451.765 kb on - strand, within HP15_2331 at 2451.765 kb on - strand, within HP15_2331 at 2451.822 kb on + strand, within HP15_2331 at 2451.994 kb on + strand at 2452.001 kb on - strand at 2452.183 kb on + strand, within HP15_2332 at 2452.222 kb on + strand, within HP15_2332 at 2452.370 kb on - strand, within HP15_2332 at 2452.493 kb on + strand, within HP15_2332 at 2452.561 kb on - strand, within HP15_2332 at 2452.679 kb on + strand, within HP15_2332 at 2452.835 kb on - strand, within HP15_2332 at 2452.935 kb on + strand, within HP15_2332 at 2452.935 kb on + strand, within HP15_2332 at 2452.935 kb on + strand, within HP15_2332 at 2452.957 kb on + strand, within HP15_2332 at 2453.016 kb on - strand, within HP15_2332 at 2453.027 kb on + strand, within HP15_2332 at 2453.235 kb on - strand, within HP15_2332 at 2453.328 kb on - strand at 2453.331 kb on + strand at 2453.397 kb on + strand at 2453.567 kb on - strand at 2453.667 kb on + strand at 2453.677 kb on + strand, within HP15_2333 at 2453.677 kb on + strand, within HP15_2333 at 2453.677 kb on + strand, within HP15_2333 at 2453.738 kb on - strand, within HP15_2333 at 2453.793 kb on + strand, within HP15_2333 at 2453.850 kb on + strand, within HP15_2333 at 2453.857 kb on - strand, within HP15_2333 at 2453.883 kb on + strand, within HP15_2333 at 2453.891 kb on - strand, within HP15_2333 at 2453.891 kb on - strand, within HP15_2333 at 2453.891 kb on - strand, within HP15_2333 at 2453.891 kb on - strand, within HP15_2333 at 2453.891 kb on - strand, within HP15_2333 at 2453.924 kb on - strand, within HP15_2333 at 2453.956 kb on - strand, within HP15_2333 at 2454.248 kb on + strand, within HP15_2334
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,451,064 + HP15_2330 0.62 +1.6 2,451,181 + HP15_2330 0.71 +2.1 2,451,207 - HP15_2330 0.72 +2.5 2,451,249 + HP15_2330 0.75 +2.3 2,451,252 - HP15_2330 0.76 +2.3 2,451,254 + HP15_2330 0.76 +2.2 2,451,254 + HP15_2330 0.76 +2.4 2,451,264 + HP15_2330 0.76 +2.2 2,451,272 - HP15_2330 0.77 +2.2 2,451,327 + HP15_2330 0.81 +1.6 2,451,354 + HP15_2330 0.83 +2.3 2,451,381 + HP15_2330 0.85 +2.1 2,451,388 - HP15_2330 0.85 +2.1 2,451,394 - HP15_2330 0.85 +2.2 2,451,396 + HP15_2330 0.86 +2.6 2,451,396 + HP15_2330 0.86 +2.1 2,451,404 - HP15_2330 0.86 +2.2 2,451,491 + +1.5 2,451,652 + +2.3 2,451,660 - +0.3 2,451,660 - +0.2 2,451,765 - HP15_2331 0.22 +1.3 2,451,765 - HP15_2331 0.22 +1.7 2,451,765 - HP15_2331 0.22 +1.7 2,451,822 + HP15_2331 0.40 +1.6 2,451,994 + +1.2 2,452,001 - +1.1 2,452,183 + HP15_2332 0.11 -0.8 2,452,222 + HP15_2332 0.14 -0.2 2,452,370 - HP15_2332 0.24 -0.3 2,452,493 + HP15_2332 0.33 -0.7 2,452,561 - HP15_2332 0.38 -2.1 2,452,679 + HP15_2332 0.47 -0.7 2,452,835 - HP15_2332 0.59 -0.7 2,452,935 + HP15_2332 0.66 -0.5 2,452,935 + HP15_2332 0.66 +2.0 2,452,935 + HP15_2332 0.66 +2.0 2,452,957 + HP15_2332 0.68 -1.9 2,453,016 - HP15_2332 0.72 -0.2 2,453,027 + HP15_2332 0.73 -0.5 2,453,235 - HP15_2332 0.88 -0.6 2,453,328 - -0.8 2,453,331 + -0.4 2,453,397 + +0.9 2,453,567 - +1.7 2,453,667 + -1.7 2,453,677 + HP15_2333 0.11 -2.2 2,453,677 + HP15_2333 0.11 -1.3 2,453,677 + HP15_2333 0.11 -1.5 2,453,738 - HP15_2333 0.23 -2.0 2,453,793 + HP15_2333 0.34 -1.9 2,453,850 + HP15_2333 0.45 -0.9 2,453,857 - HP15_2333 0.46 -0.5 2,453,883 + HP15_2333 0.51 -1.5 2,453,891 - HP15_2333 0.53 -1.1 2,453,891 - HP15_2333 0.53 -0.4 2,453,891 - HP15_2333 0.53 -1.3 2,453,891 - HP15_2333 0.53 +1.2 2,453,891 - HP15_2333 0.53 +0.3 2,453,924 - HP15_2333 0.59 -0.2 2,453,956 - HP15_2333 0.65 -1.8 2,454,248 + HP15_2334 0.24 -0.3
Or see this region's nucleotide sequence