Strain Fitness in Marinobacter adhaerens HP15 around HP15_2328

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2326 and HP15_2327 are separated by 15 nucleotidesHP15_2327 and HP15_2328 are separated by 251 nucleotidesHP15_2328 and HP15_2329 are separated by 12 nucleotides HP15_2326: HP15_2326 - flagellar MS-ring protein, at 2,444,875 to 2,446,584 _2326 HP15_2327: HP15_2327 - flagellar hook-basal body complex protein FliE, at 2,446,600 to 2,446,968 _2327 HP15_2328: HP15_2328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,447,220 to 2,448,686 _2328 HP15_2329: HP15_2329 - two-component sensor, at 2,448,699 to 2,449,937 _2329 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -1 0 1 2at 2446.316 kb on + strand, within HP15_2326at 2446.408 kb on + strand, within HP15_2326at 2446.465 kb on - strandat 2446.475 kb on + strandat 2446.526 kb on + strandat 2446.526 kb on + strandat 2446.587 kb on - strandat 2446.587 kb on - strandat 2446.638 kb on - strand, within HP15_2327at 2446.682 kb on - strand, within HP15_2327at 2446.708 kb on + strand, within HP15_2327at 2446.716 kb on - strand, within HP15_2327at 2446.817 kb on - strand, within HP15_2327at 2446.823 kb on - strand, within HP15_2327at 2446.882 kb on - strand, within HP15_2327at 2446.890 kb on + strand, within HP15_2327at 2446.900 kb on - strand, within HP15_2327at 2446.945 kb on + strandat 2446.951 kb on - strandat 2446.978 kb on - strandat 2447.223 kb on + strandat 2447.231 kb on - strandat 2447.276 kb on + strandat 2447.395 kb on - strand, within HP15_2328at 2447.448 kb on - strand, within HP15_2328at 2447.499 kb on - strand, within HP15_2328at 2447.535 kb on + strand, within HP15_2328at 2447.538 kb on - strand, within HP15_2328at 2447.540 kb on + strand, within HP15_2328at 2447.540 kb on + strand, within HP15_2328at 2447.548 kb on - strand, within HP15_2328at 2447.548 kb on - strand, within HP15_2328at 2447.601 kb on - strand, within HP15_2328at 2447.637 kb on - strand, within HP15_2328at 2447.897 kb on + strand, within HP15_2328at 2447.976 kb on + strand, within HP15_2328at 2448.027 kb on - strand, within HP15_2328at 2448.027 kb on - strand, within HP15_2328at 2448.037 kb on - strand, within HP15_2328at 2448.183 kb on + strand, within HP15_2328at 2448.487 kb on + strand, within HP15_2328at 2448.622 kb on + strandat 2448.644 kb on + strandat 2448.644 kb on + strandat 2448.644 kb on + strandat 2448.644 kb on + strandat 2448.652 kb on - strandat 2448.652 kb on - strandat 2448.684 kb on - strandat 2448.742 kb on + strandat 2448.816 kb on + strandat 2448.881 kb on + strand, within HP15_2329at 2448.989 kb on + strand, within HP15_2329at 2449.110 kb on - strand, within HP15_2329at 2449.196 kb on + strand, within HP15_2329at 2449.282 kb on + strand, within HP15_2329at 2449.312 kb on - strand, within HP15_2329at 2449.314 kb on + strand, within HP15_2329at 2449.368 kb on - strand, within HP15_2329at 2449.371 kb on + strand, within HP15_2329at 2449.425 kb on - strand, within HP15_2329at 2449.466 kb on + strand, within HP15_2329at 2449.484 kb on + strand, within HP15_2329at 2449.492 kb on - strand, within HP15_2329at 2449.529 kb on + strand, within HP15_2329at 2449.543 kb on - strand, within HP15_2329at 2449.548 kb on - strand, within HP15_2329at 2449.560 kb on - strand, within HP15_2329

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,446,316 + HP15_2326 0.84 +2.2
2,446,408 + HP15_2326 0.90 +2.5
2,446,465 - +2.1
2,446,475 + +2.0
2,446,526 + +1.9
2,446,526 + +1.6
2,446,587 - +1.6
2,446,587 - +2.1
2,446,638 - HP15_2327 0.10 +2.2
2,446,682 - HP15_2327 0.22 +2.0
2,446,708 + HP15_2327 0.29 +1.2
2,446,716 - HP15_2327 0.31 +2.0
2,446,817 - HP15_2327 0.59 +2.0
2,446,823 - HP15_2327 0.60 +2.4
2,446,882 - HP15_2327 0.76 +2.0
2,446,890 + HP15_2327 0.79 +2.3
2,446,900 - HP15_2327 0.81 +2.2
2,446,945 + +2.1
2,446,951 - +2.0
2,446,978 - +0.7
2,447,223 + +2.3
2,447,231 - +2.0
2,447,276 + +1.7
2,447,395 - HP15_2328 0.12 +1.6
2,447,448 - HP15_2328 0.16 +0.6
2,447,499 - HP15_2328 0.19 +1.8
2,447,535 + HP15_2328 0.21 +1.2
2,447,538 - HP15_2328 0.22 +1.5
2,447,540 + HP15_2328 0.22 +2.0
2,447,540 + HP15_2328 0.22 +1.9
2,447,548 - HP15_2328 0.22 +1.2
2,447,548 - HP15_2328 0.22 +1.4
2,447,601 - HP15_2328 0.26 +2.4
2,447,637 - HP15_2328 0.28 +2.6
2,447,897 + HP15_2328 0.46 +2.6
2,447,976 + HP15_2328 0.52 +2.0
2,448,027 - HP15_2328 0.55 +2.4
2,448,027 - HP15_2328 0.55 +1.5
2,448,037 - HP15_2328 0.56 +2.1
2,448,183 + HP15_2328 0.66 +2.7
2,448,487 + HP15_2328 0.86 +1.5
2,448,622 + +2.0
2,448,644 + +2.1
2,448,644 + +0.0
2,448,644 + +2.1
2,448,644 + +2.2
2,448,652 - +1.4
2,448,652 - +2.6
2,448,684 - +2.5
2,448,742 + +1.8
2,448,816 + +2.5
2,448,881 + HP15_2329 0.15 +2.0
2,448,989 + HP15_2329 0.23 +2.4
2,449,110 - HP15_2329 0.33 +2.1
2,449,196 + HP15_2329 0.40 +1.9
2,449,282 + HP15_2329 0.47 +2.2
2,449,312 - HP15_2329 0.49 +2.2
2,449,314 + HP15_2329 0.50 +1.9
2,449,368 - HP15_2329 0.54 +2.0
2,449,371 + HP15_2329 0.54 +2.0
2,449,425 - HP15_2329 0.59 +1.7
2,449,466 + HP15_2329 0.62 +1.4
2,449,484 + HP15_2329 0.63 +2.6
2,449,492 - HP15_2329 0.64 +1.9
2,449,529 + HP15_2329 0.67 +2.0
2,449,543 - HP15_2329 0.68 +1.3
2,449,548 - HP15_2329 0.69 +2.4
2,449,560 - HP15_2329 0.69 +2.4

Or see this region's nucleotide sequence