Strain Fitness in Marinobacter adhaerens HP15 around HP15_2090

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2089 and HP15_2090 are separated by 5 nucleotidesHP15_2090 and HP15_2091 overlap by 12 nucleotides HP15_2089: HP15_2089 - cupin 4 family protein, at 2,187,108 to 2,188,259 _2089 HP15_2090: HP15_2090 - GCN5-related N-acetyltransferase, at 2,188,265 to 2,189,230 _2090 HP15_2091: HP15_2091 - transcriptional regulator, LysR family protein, at 2,189,219 to 2,190,253 _2091 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -1 0 1 2 3at 2188.267 kb on - strandat 2188.268 kb on - strandat 2188.410 kb on - strand, within HP15_2090at 2188.458 kb on + strand, within HP15_2090at 2188.579 kb on + strand, within HP15_2090at 2188.583 kb on - strand, within HP15_2090at 2188.730 kb on - strand, within HP15_2090at 2188.901 kb on + strand, within HP15_2090at 2189.065 kb on + strand, within HP15_2090at 2189.201 kb on + strandat 2189.592 kb on + strand, within HP15_2091at 2189.592 kb on + strand, within HP15_2091at 2189.592 kb on + strand, within HP15_2091at 2189.625 kb on - strand, within HP15_2091at 2189.692 kb on - strand, within HP15_2091at 2189.850 kb on - strand, within HP15_2091at 2189.850 kb on - strand, within HP15_2091at 2189.945 kb on + strand, within HP15_2091at 2189.967 kb on + strand, within HP15_2091at 2190.038 kb on + strand, within HP15_2091at 2190.081 kb on + strand, within HP15_2091at 2190.089 kb on - strand, within HP15_2091at 2190.089 kb on - strand, within HP15_2091at 2190.130 kb on + strand, within HP15_2091at 2190.138 kb on - strand, within HP15_2091at 2190.203 kb on + strandat 2190.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,188,267 - -1.4
2,188,268 - -0.5
2,188,410 - HP15_2090 0.15 -0.5
2,188,458 + HP15_2090 0.20 -0.2
2,188,579 + HP15_2090 0.33 -0.1
2,188,583 - HP15_2090 0.33 -0.2
2,188,730 - HP15_2090 0.48 -0.5
2,188,901 + HP15_2090 0.66 -0.4
2,189,065 + HP15_2090 0.83 -0.4
2,189,201 + +0.8
2,189,592 + HP15_2091 0.36 +2.0
2,189,592 + HP15_2091 0.36 -0.6
2,189,592 + HP15_2091 0.36 -0.8
2,189,625 - HP15_2091 0.39 -0.1
2,189,692 - HP15_2091 0.46 -0.5
2,189,850 - HP15_2091 0.61 -0.7
2,189,850 - HP15_2091 0.61 +2.6
2,189,945 + HP15_2091 0.70 +2.8
2,189,967 + HP15_2091 0.72 -0.2
2,190,038 + HP15_2091 0.79 -0.5
2,190,081 + HP15_2091 0.83 -0.3
2,190,089 - HP15_2091 0.84 +0.6
2,190,089 - HP15_2091 0.84 -0.5
2,190,130 + HP15_2091 0.88 -0.2
2,190,138 - HP15_2091 0.89 +2.1
2,190,203 + -0.2
2,190,206 - -0.4

Or see this region's nucleotide sequence