Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2055 and HP15_2056 are separated by 145 nucleotides HP15_2056 and HP15_2057 are separated by 1 nucleotides HP15_2057 and HP15_2058 are separated by 85 nucleotides
HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331
_2055
HP15_2056: HP15_2056 - transcriptional regulator of AsnC/Lrp family protein, at 2,157,477 to 2,157,974
_2056
HP15_2057: HP15_2057 - transcriptional regulator, TetR family, at 2,157,976 to 2,158,632
_2057
HP15_2058: HP15_2058 - prolyl-tRNA synthetase, at 2,158,718 to 2,160,451
_2058
Position (kb)
2157
2158 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2156.585 kb on + strand, within HP15_2055 at 2156.621 kb on - strand, within HP15_2055 at 2156.705 kb on - strand, within HP15_2055 at 2156.739 kb on + strand, within HP15_2055 at 2156.866 kb on + strand, within HP15_2055 at 2157.026 kb on + strand, within HP15_2055 at 2157.200 kb on - strand at 2157.328 kb on - strand at 2157.772 kb on + strand, within HP15_2056 at 2157.780 kb on + strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.946 kb on - strand at 2157.951 kb on - strand at 2157.951 kb on - strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.189 kb on - strand, within HP15_2057 at 2158.232 kb on - strand, within HP15_2057 at 2158.322 kb on - strand, within HP15_2057 at 2158.379 kb on + strand, within HP15_2057 at 2158.509 kb on + strand, within HP15_2057 at 2158.540 kb on + strand, within HP15_2057 at 2158.548 kb on - strand, within HP15_2057 at 2158.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,156,585 + HP15_2055 0.56 +2.0 2,156,621 - HP15_2055 0.58 -0.4 2,156,705 - HP15_2055 0.63 -0.4 2,156,739 + HP15_2055 0.65 +0.0 2,156,866 + HP15_2055 0.73 +2.2 2,157,026 + HP15_2055 0.82 -1.7 2,157,200 - +1.5 2,157,328 - -0.4 2,157,772 + HP15_2056 0.59 -0.6 2,157,780 + HP15_2056 0.61 -0.1 2,157,788 - HP15_2056 0.62 -1.1 2,157,788 - HP15_2056 0.62 -0.8 2,157,946 - +2.2 2,157,951 - +1.7 2,157,951 - +1.3 2,158,013 + -0.5 2,158,013 + +2.0 2,158,013 + -1.1 2,158,189 - HP15_2057 0.32 -0.7 2,158,232 - HP15_2057 0.39 -1.7 2,158,322 - HP15_2057 0.53 +3.2 2,158,379 + HP15_2057 0.61 -0.3 2,158,509 + HP15_2057 0.81 +0.2 2,158,540 + HP15_2057 0.86 -1.3 2,158,548 - HP15_2057 0.87 +0.1 2,158,599 - +1.6
Or see this region's nucleotide sequence