Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1899 and HP15_1900 are separated by 11 nucleotides HP15_1900 and HP15_1901 are separated by 32 nucleotides
HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943
_1899
HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479
_1900
HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798
_1901
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2008.985 kb on - strand at 2009.053 kb on + strand, within HP15_1899 at 2009.100 kb on - strand, within HP15_1899 at 2009.100 kb on - strand, within HP15_1899 at 2009.137 kb on + strand, within HP15_1899 at 2009.306 kb on - strand, within HP15_1899 at 2009.321 kb on + strand, within HP15_1899 at 2009.340 kb on + strand, within HP15_1899 at 2009.340 kb on + strand, within HP15_1899 at 2009.452 kb on - strand, within HP15_1899 at 2009.463 kb on - strand, within HP15_1899 at 2009.477 kb on + strand, within HP15_1899 at 2009.478 kb on + strand, within HP15_1899 at 2009.604 kb on - strand, within HP15_1899 at 2009.692 kb on + strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.783 kb on + strand, within HP15_1899 at 2009.801 kb on + strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.819 kb on - strand, within HP15_1899 at 2010.302 kb on - strand, within HP15_1900 at 2010.395 kb on - strand, within HP15_1900 at 2010.548 kb on + strand at 2010.601 kb on + strand at 2010.616 kb on + strand at 2010.624 kb on - strand at 2010.668 kb on - strand, within HP15_1901 at 2010.701 kb on + strand, within HP15_1901 at 2010.757 kb on + strand, within HP15_1901 at 2010.907 kb on - strand, within HP15_1901 at 2011.047 kb on - strand, within HP15_1901 at 2011.063 kb on + strand, within HP15_1901 at 2011.209 kb on + strand, within HP15_1901 at 2011.211 kb on - strand, within HP15_1901 at 2011.234 kb on + strand, within HP15_1901 at 2011.451 kb on - strand, within HP15_1901
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,008,985 - +0.7 2,009,053 + HP15_1899 0.13 +1.7 2,009,100 - HP15_1899 0.18 -0.6 2,009,100 - HP15_1899 0.18 -2.1 2,009,137 + HP15_1899 0.21 +0.1 2,009,306 - HP15_1899 0.38 -0.7 2,009,321 + HP15_1899 0.39 +1.9 2,009,340 + HP15_1899 0.41 +0.3 2,009,340 + HP15_1899 0.41 +0.7 2,009,452 - HP15_1899 0.52 +1.7 2,009,463 - HP15_1899 0.53 +2.1 2,009,477 + HP15_1899 0.54 -1.4 2,009,478 + HP15_1899 0.55 -0.4 2,009,604 - HP15_1899 0.67 +0.9 2,009,692 + HP15_1899 0.75 -1.1 2,009,722 - HP15_1899 0.78 -0.9 2,009,722 - HP15_1899 0.78 +1.9 2,009,722 - HP15_1899 0.78 -0.8 2,009,783 + HP15_1899 0.84 +0.2 2,009,801 + HP15_1899 0.86 -0.6 2,009,801 - HP15_1899 0.86 -0.6 2,009,801 - HP15_1899 0.86 -0.6 2,009,819 - HP15_1899 0.88 +2.6 2,010,302 - HP15_1900 0.66 +1.8 2,010,395 - HP15_1900 0.84 +2.7 2,010,548 + +0.0 2,010,601 + +0.1 2,010,616 + +0.3 2,010,624 - -1.5 2,010,668 - HP15_1901 0.12 +2.2 2,010,701 + HP15_1901 0.15 +2.5 2,010,757 + HP15_1901 0.19 -0.7 2,010,907 - HP15_1901 0.31 +1.7 2,011,047 - HP15_1901 0.42 -0.6 2,011,063 + HP15_1901 0.43 +2.0 2,011,209 + HP15_1901 0.54 +0.4 2,011,211 - HP15_1901 0.54 -0.3 2,011,234 + HP15_1901 0.56 +0.1 2,011,451 - HP15_1901 0.73 -0.5
Or see this region's nucleotide sequence