Strain Fitness in Marinobacter adhaerens HP15 around HP15_1900

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1899 and HP15_1900 are separated by 11 nucleotidesHP15_1900 and HP15_1901 are separated by 32 nucleotides HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943 _1899 HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479 _1900 HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798 _1901 Position (kb) 2009 2010 2011Strain fitness (log2 ratio) -2 -1 0 1 2at 2008.985 kb on - strandat 2009.053 kb on + strand, within HP15_1899at 2009.100 kb on - strand, within HP15_1899at 2009.100 kb on - strand, within HP15_1899at 2009.137 kb on + strand, within HP15_1899at 2009.306 kb on - strand, within HP15_1899at 2009.321 kb on + strand, within HP15_1899at 2009.340 kb on + strand, within HP15_1899at 2009.340 kb on + strand, within HP15_1899at 2009.452 kb on - strand, within HP15_1899at 2009.463 kb on - strand, within HP15_1899at 2009.477 kb on + strand, within HP15_1899at 2009.478 kb on + strand, within HP15_1899at 2009.604 kb on - strand, within HP15_1899at 2009.692 kb on + strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.783 kb on + strand, within HP15_1899at 2009.801 kb on + strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.819 kb on - strand, within HP15_1899at 2010.302 kb on - strand, within HP15_1900at 2010.395 kb on - strand, within HP15_1900at 2010.548 kb on + strandat 2010.601 kb on + strandat 2010.616 kb on + strandat 2010.624 kb on - strandat 2010.668 kb on - strand, within HP15_1901at 2010.701 kb on + strand, within HP15_1901at 2010.757 kb on + strand, within HP15_1901at 2010.907 kb on - strand, within HP15_1901at 2011.047 kb on - strand, within HP15_1901at 2011.063 kb on + strand, within HP15_1901at 2011.209 kb on + strand, within HP15_1901at 2011.211 kb on - strand, within HP15_1901at 2011.234 kb on + strand, within HP15_1901at 2011.451 kb on - strand, within HP15_1901

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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2,008,985 - +0.7
2,009,053 + HP15_1899 0.13 +1.7
2,009,100 - HP15_1899 0.18 -0.6
2,009,100 - HP15_1899 0.18 -2.1
2,009,137 + HP15_1899 0.21 +0.1
2,009,306 - HP15_1899 0.38 -0.7
2,009,321 + HP15_1899 0.39 +1.9
2,009,340 + HP15_1899 0.41 +0.3
2,009,340 + HP15_1899 0.41 +0.7
2,009,452 - HP15_1899 0.52 +1.7
2,009,463 - HP15_1899 0.53 +2.1
2,009,477 + HP15_1899 0.54 -1.4
2,009,478 + HP15_1899 0.55 -0.4
2,009,604 - HP15_1899 0.67 +0.9
2,009,692 + HP15_1899 0.75 -1.1
2,009,722 - HP15_1899 0.78 -0.9
2,009,722 - HP15_1899 0.78 +1.9
2,009,722 - HP15_1899 0.78 -0.8
2,009,783 + HP15_1899 0.84 +0.2
2,009,801 + HP15_1899 0.86 -0.6
2,009,801 - HP15_1899 0.86 -0.6
2,009,801 - HP15_1899 0.86 -0.6
2,009,819 - HP15_1899 0.88 +2.6
2,010,302 - HP15_1900 0.66 +1.8
2,010,395 - HP15_1900 0.84 +2.7
2,010,548 + +0.0
2,010,601 + +0.1
2,010,616 + +0.3
2,010,624 - -1.5
2,010,668 - HP15_1901 0.12 +2.2
2,010,701 + HP15_1901 0.15 +2.5
2,010,757 + HP15_1901 0.19 -0.7
2,010,907 - HP15_1901 0.31 +1.7
2,011,047 - HP15_1901 0.42 -0.6
2,011,063 + HP15_1901 0.43 +2.0
2,011,209 + HP15_1901 0.54 +0.4
2,011,211 - HP15_1901 0.54 -0.3
2,011,234 + HP15_1901 0.56 +0.1
2,011,451 - HP15_1901 0.73 -0.5

Or see this region's nucleotide sequence