Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1795 and HP15_1796 overlap by 8 nucleotides HP15_1796 and HP15_1797 are separated by 74 nucleotides HP15_1797 and HP15_1798 are separated by 20 nucleotides
HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148
_1795
HP15_1796: HP15_1796 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) , at 1,889,141 to 1,889,647
_1796
HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723
_1797
HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805
_1798
Position (kb)
1889
1890
1891 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1889.200 kb on - strand, within HP15_1796 at 1889.817 kb on - strand at 1889.931 kb on + strand, within HP15_1797 at 1889.939 kb on - strand, within HP15_1797 at 1889.958 kb on - strand, within HP15_1797 at 1890.002 kb on + strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.161 kb on + strand, within HP15_1797 at 1890.262 kb on - strand, within HP15_1797 at 1890.342 kb on - strand, within HP15_1797 at 1890.382 kb on + strand, within HP15_1797 at 1890.548 kb on + strand, within HP15_1797 at 1890.681 kb on - strand at 1890.689 kb on - strand at 1890.703 kb on - strand at 1890.910 kb on + strand, within HP15_1798 at 1890.959 kb on + strand, within HP15_1798 at 1890.995 kb on - strand, within HP15_1798 at 1891.223 kb on - strand, within HP15_1798 at 1891.311 kb on - strand, within HP15_1798 at 1891.408 kb on + strand, within HP15_1798 at 1891.413 kb on + strand, within HP15_1798 at 1891.445 kb on + strand, within HP15_1798 at 1891.479 kb on + strand, within HP15_1798 at 1891.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 1,889,200 - HP15_1796 0.12 -2.0 1,889,817 - -0.2 1,889,931 + HP15_1797 0.21 +1.9 1,889,939 - HP15_1797 0.22 -0.3 1,889,958 - HP15_1797 0.24 +0.5 1,890,002 + HP15_1797 0.28 +1.9 1,890,010 - HP15_1797 0.29 -0.3 1,890,010 - HP15_1797 0.29 +2.2 1,890,161 + HP15_1797 0.44 +2.0 1,890,262 - HP15_1797 0.54 -0.1 1,890,342 - HP15_1797 0.62 +2.4 1,890,382 + HP15_1797 0.66 -0.1 1,890,548 + HP15_1797 0.82 +0.2 1,890,681 - -0.2 1,890,689 - -1.4 1,890,703 - +1.9 1,890,910 + HP15_1798 0.16 -0.8 1,890,959 + HP15_1798 0.20 -0.9 1,890,995 - HP15_1798 0.24 +2.8 1,891,223 - HP15_1798 0.45 +2.1 1,891,311 - HP15_1798 0.53 +0.1 1,891,408 + HP15_1798 0.63 -0.8 1,891,413 + HP15_1798 0.63 +2.4 1,891,445 + HP15_1798 0.66 +1.5 1,891,479 + HP15_1798 0.69 +2.1 1,891,704 + +2.2
Or see this region's nucleotide sequence