Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_174 and HP15_175 are separated by 60 nucleotides HP15_175 and HP15_176 are separated by 175 nucleotides HP15_176 and HP15_178 are separated by 24 nucleotides
HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684
_174
HP15_175: HP15_175 - conserved hypothetical protein, at 166,745 to 167,203
_175
HP15_176: HP15_176 - uncharacterized conserved protein, at 167,379 to 167,765
_176
HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063
_178
Position (kb) 167
168 Strain fitness (log2 ratio) -1
0
1
2
3 at 166.535 kb on - strand, within HP15_174 at 166.597 kb on - strand at 166.624 kb on + strand at 166.671 kb on + strand at 166.671 kb on + strand at 166.671 kb on + strand at 166.679 kb on - strand at 166.679 kb on - strand at 166.722 kb on - strand at 166.722 kb on - strand at 166.881 kb on - strand, within HP15_175 at 166.911 kb on - strand, within HP15_175 at 166.943 kb on - strand, within HP15_175 at 166.945 kb on + strand, within HP15_175 at 166.988 kb on + strand, within HP15_175 at 166.996 kb on + strand, within HP15_175 at 166.996 kb on - strand, within HP15_175 at 167.004 kb on - strand, within HP15_175 at 167.008 kb on - strand, within HP15_175 at 167.011 kb on + strand, within HP15_175 at 167.149 kb on - strand, within HP15_175 at 167.189 kb on + strand at 167.190 kb on - strand at 167.301 kb on + strand at 167.315 kb on - strand at 167.320 kb on - strand at 167.404 kb on - strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.411 kb on - strand at 167.418 kb on - strand, within HP15_176 at 167.418 kb on - strand, within HP15_176 at 167.418 kb on - strand, within HP15_176 at 167.440 kb on - strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.497 kb on - strand, within HP15_176 at 167.497 kb on - strand, within HP15_176 at 167.500 kb on + strand, within HP15_176 at 167.582 kb on - strand, within HP15_176 at 167.614 kb on + strand, within HP15_176 at 167.615 kb on + strand, within HP15_176 at 167.679 kb on + strand, within HP15_176 at 167.694 kb on + strand, within HP15_176 at 167.694 kb on + strand, within HP15_176 at 167.707 kb on + strand, within HP15_176 at 167.707 kb on + strand, within HP15_176 at 167.763 kb on - strand at 167.795 kb on + strand at 167.858 kb on + strand at 168.024 kb on + strand, within HP15_178 at 168.037 kb on + strand, within HP15_178 at 168.074 kb on + strand, within HP15_178 at 168.185 kb on + strand, within HP15_178 at 168.371 kb on + strand, within HP15_178 at 168.434 kb on - strand, within HP15_178 at 168.531 kb on + strand, within HP15_178 at 168.586 kb on + strand, within HP15_178 at 168.592 kb on + strand, within HP15_178 at 168.601 kb on + strand, within HP15_178 at 168.741 kb on - strand, within HP15_178
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 166,535 - HP15_174 0.88 +0.5 166,597 - -0.7 166,624 + +1.9 166,671 + +1.7 166,671 + +0.0 166,671 + +2.0 166,679 - +2.8 166,679 - -0.9 166,722 - -0.2 166,722 - +0.1 166,881 - HP15_175 0.30 +1.9 166,911 - HP15_175 0.36 -0.2 166,943 - HP15_175 0.43 -0.2 166,945 + HP15_175 0.44 +1.6 166,988 + HP15_175 0.53 -0.8 166,996 + HP15_175 0.55 +1.5 166,996 - HP15_175 0.55 +2.2 167,004 - HP15_175 0.56 +2.6 167,008 - HP15_175 0.57 -0.3 167,011 + HP15_175 0.58 -1.4 167,149 - HP15_175 0.88 -0.5 167,189 + -1.2 167,190 - -0.7 167,301 + +0.6 167,315 - +2.6 167,320 - -0.8 167,404 - -0.0 167,410 + +1.4 167,410 + -0.5 167,410 + -0.2 167,410 + -0.1 167,411 - +2.0 167,418 - HP15_176 0.10 +2.4 167,418 - HP15_176 0.10 -0.7 167,418 - HP15_176 0.10 -0.1 167,440 - HP15_176 0.16 -1.1 167,489 + HP15_176 0.28 -0.2 167,489 + HP15_176 0.28 +0.1 167,489 + HP15_176 0.28 -0.1 167,489 + HP15_176 0.28 -0.7 167,489 + HP15_176 0.28 +1.3 167,489 + HP15_176 0.28 -0.1 167,497 - HP15_176 0.30 -1.1 167,497 - HP15_176 0.30 -0.5 167,500 + HP15_176 0.31 -0.5 167,582 - HP15_176 0.52 +2.2 167,614 + HP15_176 0.61 -0.1 167,615 + HP15_176 0.61 -1.2 167,679 + HP15_176 0.78 -0.2 167,694 + HP15_176 0.81 -0.5 167,694 + HP15_176 0.81 -0.9 167,707 + HP15_176 0.85 -0.4 167,707 + HP15_176 0.85 +2.1 167,763 - +2.1 167,795 + +2.0 167,858 + +0.9 168,024 + HP15_178 0.10 +1.8 168,037 + HP15_178 0.11 +0.1 168,074 + HP15_178 0.12 +0.8 168,185 + HP15_178 0.17 -1.5 168,371 + HP15_178 0.26 +0.1 168,434 - HP15_178 0.28 -0.1 168,531 + HP15_178 0.33 -0.5 168,586 + HP15_178 0.35 -0.3 168,592 + HP15_178 0.35 -0.6 168,601 + HP15_178 0.36 +0.8 168,741 - HP15_178 0.42 -0.1
Or see this region's nucleotide sequence