Strain Fitness in Marinobacter adhaerens HP15 around HP15_1629

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1628 and HP15_1629 are separated by 116 nucleotidesHP15_1629 and HP15_1630 are separated by 129 nucleotides HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653 _1628 HP15_1629: HP15_1629 - methyl-accepting chemotaxis sensory transducer, at 1,726,770 to 1,728,719 _1629 HP15_1630: HP15_1630 - serine/threonine protein kinase, at 1,728,849 to 1,730,693 _1630 Position (kb) 1726 1727 1728 1729Strain fitness (log2 ratio) -1 0 1 2 3at 1725.901 kb on - strand, within HP15_1628at 1725.947 kb on - strand, within HP15_1628at 1725.952 kb on - strand, within HP15_1628at 1726.040 kb on - strand, within HP15_1628at 1726.067 kb on + strand, within HP15_1628at 1726.116 kb on + strand, within HP15_1628at 1726.197 kb on + strand, within HP15_1628at 1726.218 kb on + strand, within HP15_1628at 1726.289 kb on + strand, within HP15_1628at 1726.297 kb on - strand, within HP15_1628at 1726.297 kb on - strand, within HP15_1628at 1726.300 kb on + strand, within HP15_1628at 1726.326 kb on + strand, within HP15_1628at 1726.395 kb on + strand, within HP15_1628at 1726.561 kb on + strandat 1726.579 kb on - strandat 1726.783 kb on + strandat 1726.791 kb on - strandat 1727.081 kb on - strand, within HP15_1629at 1727.086 kb on - strand, within HP15_1629at 1727.255 kb on + strand, within HP15_1629at 1727.265 kb on + strand, within HP15_1629at 1727.335 kb on - strand, within HP15_1629at 1727.465 kb on + strand, within HP15_1629at 1727.473 kb on - strand, within HP15_1629at 1727.510 kb on - strand, within HP15_1629at 1727.588 kb on + strand, within HP15_1629at 1727.783 kb on + strand, within HP15_1629at 1728.097 kb on + strand, within HP15_1629at 1728.136 kb on + strand, within HP15_1629at 1728.198 kb on - strand, within HP15_1629at 1728.222 kb on - strand, within HP15_1629at 1728.227 kb on + strand, within HP15_1629at 1728.235 kb on - strand, within HP15_1629at 1728.296 kb on - strand, within HP15_1629at 1728.734 kb on - strandat 1729.109 kb on + strand, within HP15_1630at 1729.117 kb on - strand, within HP15_1630at 1729.175 kb on + strand, within HP15_1630at 1729.292 kb on - strand, within HP15_1630at 1729.493 kb on - strand, within HP15_1630at 1729.659 kb on - strand, within HP15_1630at 1729.684 kb on - strand, within HP15_1630at 1729.697 kb on + strand, within HP15_1630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,725,901 - HP15_1628 0.33 +3.1
1,725,947 - HP15_1628 0.37 +0.4
1,725,952 - HP15_1628 0.37 -0.5
1,726,040 - HP15_1628 0.45 +0.6
1,726,067 + HP15_1628 0.48 +2.0
1,726,116 + HP15_1628 0.52 -0.4
1,726,197 + HP15_1628 0.59 +0.1
1,726,218 + HP15_1628 0.61 -0.2
1,726,289 + HP15_1628 0.67 +1.8
1,726,297 - HP15_1628 0.68 +2.0
1,726,297 - HP15_1628 0.68 -0.5
1,726,300 + HP15_1628 0.68 +0.1
1,726,326 + HP15_1628 0.71 +1.4
1,726,395 + HP15_1628 0.77 -0.7
1,726,561 + -0.8
1,726,579 - -0.1
1,726,783 + -0.7
1,726,791 - -0.6
1,727,081 - HP15_1629 0.16 -0.5
1,727,086 - HP15_1629 0.16 -0.2
1,727,255 + HP15_1629 0.25 -0.5
1,727,265 + HP15_1629 0.25 -0.2
1,727,335 - HP15_1629 0.29 +0.1
1,727,465 + HP15_1629 0.36 -0.8
1,727,473 - HP15_1629 0.36 +0.1
1,727,510 - HP15_1629 0.38 -0.4
1,727,588 + HP15_1629 0.42 -0.5
1,727,783 + HP15_1629 0.52 -0.4
1,728,097 + HP15_1629 0.68 -0.4
1,728,136 + HP15_1629 0.70 +0.3
1,728,198 - HP15_1629 0.73 -1.2
1,728,222 - HP15_1629 0.74 +2.7
1,728,227 + HP15_1629 0.75 -0.6
1,728,235 - HP15_1629 0.75 +1.7
1,728,296 - HP15_1629 0.78 +0.2
1,728,734 - +0.2
1,729,109 + HP15_1630 0.14 -0.5
1,729,117 - HP15_1630 0.15 +2.4
1,729,175 + HP15_1630 0.18 -0.2
1,729,292 - HP15_1630 0.24 -0.0
1,729,493 - HP15_1630 0.35 -0.9
1,729,659 - HP15_1630 0.44 -0.8
1,729,684 - HP15_1630 0.45 +1.9
1,729,697 + HP15_1630 0.46 -0.3

Or see this region's nucleotide sequence