Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1628 and HP15_1629 are separated by 116 nucleotides HP15_1629 and HP15_1630 are separated by 129 nucleotides
HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653
_1628
HP15_1629: HP15_1629 - methyl-accepting chemotaxis sensory transducer, at 1,726,770 to 1,728,719
_1629
HP15_1630: HP15_1630 - serine/threonine protein kinase, at 1,728,849 to 1,730,693
_1630
Position (kb)
1726
1727
1728
1729 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1725.901 kb on - strand, within HP15_1628 at 1725.947 kb on - strand, within HP15_1628 at 1725.952 kb on - strand, within HP15_1628 at 1726.040 kb on - strand, within HP15_1628 at 1726.067 kb on + strand, within HP15_1628 at 1726.116 kb on + strand, within HP15_1628 at 1726.197 kb on + strand, within HP15_1628 at 1726.218 kb on + strand, within HP15_1628 at 1726.289 kb on + strand, within HP15_1628 at 1726.297 kb on - strand, within HP15_1628 at 1726.297 kb on - strand, within HP15_1628 at 1726.300 kb on + strand, within HP15_1628 at 1726.326 kb on + strand, within HP15_1628 at 1726.395 kb on + strand, within HP15_1628 at 1726.561 kb on + strand at 1726.579 kb on - strand at 1726.783 kb on + strand at 1726.791 kb on - strand at 1727.081 kb on - strand, within HP15_1629 at 1727.086 kb on - strand, within HP15_1629 at 1727.255 kb on + strand, within HP15_1629 at 1727.265 kb on + strand, within HP15_1629 at 1727.335 kb on - strand, within HP15_1629 at 1727.465 kb on + strand, within HP15_1629 at 1727.473 kb on - strand, within HP15_1629 at 1727.510 kb on - strand, within HP15_1629 at 1727.588 kb on + strand, within HP15_1629 at 1727.783 kb on + strand, within HP15_1629 at 1728.097 kb on + strand, within HP15_1629 at 1728.136 kb on + strand, within HP15_1629 at 1728.198 kb on - strand, within HP15_1629 at 1728.222 kb on - strand, within HP15_1629 at 1728.227 kb on + strand, within HP15_1629 at 1728.235 kb on - strand, within HP15_1629 at 1728.296 kb on - strand, within HP15_1629 at 1728.734 kb on - strand at 1729.109 kb on + strand, within HP15_1630 at 1729.117 kb on - strand, within HP15_1630 at 1729.175 kb on + strand, within HP15_1630 at 1729.292 kb on - strand, within HP15_1630 at 1729.493 kb on - strand, within HP15_1630 at 1729.659 kb on - strand, within HP15_1630 at 1729.684 kb on - strand, within HP15_1630 at 1729.697 kb on + strand, within HP15_1630
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 1,725,901 - HP15_1628 0.33 +3.1 1,725,947 - HP15_1628 0.37 +0.4 1,725,952 - HP15_1628 0.37 -0.5 1,726,040 - HP15_1628 0.45 +0.6 1,726,067 + HP15_1628 0.48 +2.0 1,726,116 + HP15_1628 0.52 -0.4 1,726,197 + HP15_1628 0.59 +0.1 1,726,218 + HP15_1628 0.61 -0.2 1,726,289 + HP15_1628 0.67 +1.8 1,726,297 - HP15_1628 0.68 +2.0 1,726,297 - HP15_1628 0.68 -0.5 1,726,300 + HP15_1628 0.68 +0.1 1,726,326 + HP15_1628 0.71 +1.4 1,726,395 + HP15_1628 0.77 -0.7 1,726,561 + -0.8 1,726,579 - -0.1 1,726,783 + -0.7 1,726,791 - -0.6 1,727,081 - HP15_1629 0.16 -0.5 1,727,086 - HP15_1629 0.16 -0.2 1,727,255 + HP15_1629 0.25 -0.5 1,727,265 + HP15_1629 0.25 -0.2 1,727,335 - HP15_1629 0.29 +0.1 1,727,465 + HP15_1629 0.36 -0.8 1,727,473 - HP15_1629 0.36 +0.1 1,727,510 - HP15_1629 0.38 -0.4 1,727,588 + HP15_1629 0.42 -0.5 1,727,783 + HP15_1629 0.52 -0.4 1,728,097 + HP15_1629 0.68 -0.4 1,728,136 + HP15_1629 0.70 +0.3 1,728,198 - HP15_1629 0.73 -1.2 1,728,222 - HP15_1629 0.74 +2.7 1,728,227 + HP15_1629 0.75 -0.6 1,728,235 - HP15_1629 0.75 +1.7 1,728,296 - HP15_1629 0.78 +0.2 1,728,734 - +0.2 1,729,109 + HP15_1630 0.14 -0.5 1,729,117 - HP15_1630 0.15 +2.4 1,729,175 + HP15_1630 0.18 -0.2 1,729,292 - HP15_1630 0.24 -0.0 1,729,493 - HP15_1630 0.35 -0.9 1,729,659 - HP15_1630 0.44 -0.8 1,729,684 - HP15_1630 0.45 +1.9 1,729,697 + HP15_1630 0.46 -0.3
Or see this region's nucleotide sequence